Non-Coding RNA Search

rcst21_k10.y1

Sequence:


               
               GAAAAAATGAGATAAAATGACCAGGTCATGAGAATACTAGTGGGAGAGCATCTGCTCCAG
TGTGTCCAGAGCCTGCACAGTCCCCGGCCCGTAGTAGGTCTTTGAAGGTTGGGCAGGCTC
CTGGGTGTGGAGTGAGCGATGGGCAGAGAAGGAGGGTGCATTCTCTGGAAATGCCAAGTG
GATTTTGAAGGAGGTCATTGAAAGGTTTGAACCTGGTAGTAAGGAAGAGTGGGAATGCAC
AACTTGTATCTTTTAAAAGCACCAAAGTGGAGGGCTGGCTCAGGTCAAGTAGCTGAAGGC
AAGAGCTGAGTGCTAGCCTCTATACTGCCCACGGTGGAAACTGAGTTCGTGACTGTACTT
GAACCACTCCATCAAATCCTAGGGCATTCCAGTAAACGAGCTCCTTAAAGCTCATTTCTG
TATCTCTATCCCCTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAATGAGATAAAATGACCAGGTCATGAGAATACTAGTGGGAGAGCATCTGCTCCAG
TGTGTCCAGAGCCTGCACAGTCCCCGGCCCGTAGTAGGTCTTTGAAGGTTGGGCAGGCTC
CTGGGTGTGGAGTGAGCGATGGGCAGAGAAGGAGGGTGCATTCTCTGGAAATGCCAAGTG
GATTTTGAAGGAGGTCATTGAAAGGTTTGAACCTGGTAGTAAGGAAGAGTGGGAATGCAC
AACTTGTATCTTTTAAAAGCACCAAAGTGGAGGGCTGGCTCAGGTCAAGTAGCTGAAGGC
AAGAGCTGAGTGCTAGCCTCTATACTGCCCACGGTGGAAACTGAGTTCGTGACTGTACTT
GAACCACTCCATCAAATCCTAGGGCATTCCAGTAAACGAGCTCCTTAAAGCTCATTTCTG
TATCTCTATCCCCTCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-418, - strand, RNAz p=0.587273

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-418, - strand, RNAz p=0.587273

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               7-440, gnl|bosTau2|chr3 (22575737-22576174)
               

               
               7-440, gnl|canFam2|chr17 (56892648-56893133)
               

               
               7-440, gnl|dasNov1|scaffold_100035 (6-442)
               

               
               7-440, gnl|echTel1|scaffold_320144 (120724-120271)
               

               
               7-440, gnl|hg17|chr1 (116629148-116629642)
               

               
               7-440, gnl|Hg17|chr1 (116629356-116629805)
               

               
               7-440, gnl|loxAfr1|scaffold_13579 (10794-11284)
               

               
               7-440, gnl|mm7|chr3 (101398491-101398109)
               

               
               7-440, gnl|Mm7|chr3 (101398340-101397949)
               

               
               7-440, gnl|oryCun1|scaffold_203179 (159493-159034)
               

               
               7-440, gnl|panTro1|chr1 (116438221-116438722)
               

               
               7-440, gnl|rheMac2|chr1 (119347704-119348190)
               

               
               7-440, gnl|rn3|chr2 (196649069-196648700)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-440, gnl|bosTau2|chr3 (22575737-22576174)
               

               
               7-440, gnl|canFam2|chr17 (56892648-56893133)
               

               
               7-440, gnl|dasNov1|scaffold_100035 (6-442)
               

               
               7-440, gnl|echTel1|scaffold_320144 (120724-120271)
               

               
               7-440, gnl|hg17|chr1 (116629148-116629642)
               

               
               7-440, gnl|Hg17|chr1 (116629356-116629805)
               

               
               7-440, gnl|loxAfr1|scaffold_13579 (10794-11284)
               

               
               7-440, gnl|mm7|chr3 (101398491-101398109)
               

               
               7-440, gnl|Mm7|chr3 (101398340-101397949)
               

               
               7-440, gnl|oryCun1|scaffold_203179 (159493-159034)
               

               
               7-440, gnl|panTro1|chr1 (116438221-116438722)
               

               
               7-440, gnl|rheMac2|chr1 (119347704-119348190)
               

               
               7-440, gnl|rn3|chr2 (196649069-196648700)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	7-440, gnl\|bosTau2\|chr3 (22575737-22576174)
	7-440, gnl\|canFam2\|chr17 (56892648-56893133)
	7-440, gnl\|dasNov1\|scaffold_100035 (6-442)
	7-440, gnl\|echTel1\|scaffold_320144 (120724-120271)
	7-440, gnl\|hg17\|chr1 (116629148-116629642)
	7-440, gnl\|Hg17\|chr1 (116629356-116629805)
	7-440, gnl\|loxAfr1\|scaffold_13579 (10794-11284)
	7-440, gnl\|mm7\|chr3 (101398491-101398109)
	7-440, gnl\|Mm7\|chr3 (101398340-101397949)
	7-440, gnl\|oryCun1\|scaffold_203179 (159493-159034)
	7-440, gnl\|panTro1\|chr1 (116438221-116438722)
	7-440, gnl\|rheMac2\|chr1 (119347704-119348190)
	7-440, gnl\|rn3\|chr2 (196649069-196648700)