rcst21_m19.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCTTTTTCTTCCTTTTTTAAAATTTTTTTTTTTCTTTTTGAAATCTTATGTGACTAGG AACAGGCAGTTTTTAACAGGATCAGAGTTCTGCGTGGAGCGCAGGTTGGAACCATAGTGC AATGTGCTATGAGGTTTTGACCCAAGGACGCACTGAGCCCTACCCCCTGGCAGAGCCTCC ATTAAATGTATCGGATTCTCGCCGGGGGTAATTGGAGTTCCAGGTCCTGGGCGCTTCAGC TGAAAGCTACCACATCTGCAATGAATCTAGCAAAACACCCACGGGCCCACCCGAGCTCTC GGGAAACCCGGAGCAAGTTAACTCAAGTGTAGTTGATCAAATGGCAGTCTTTCAGAAAGA AGCGACACGCTCTCCCCCGCTGCGATTCTATCCAACCGGCAGCTCTGAATTTTTGCCAAA GGATTGATTTCCAACGCACGCGGAAGGTTTACAGGGAACCAGTGGGGGAGGGGAGGAGAA GGTACCTTGGAGGAGGTCGAGAGGAGGAGGAGCAGAAGGAGAAAATTACCAGACAGGCGG GGGAGGGAATTGGAGGCCCGGAAATCTTCCAGGATGCCTCAAATAACCCTCTCTTTCGTC TCAGAATTCAGCGCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCTTTTTCTTCCTTTTTTAAAATTTTTTTTTTTCTTTTTGAAATCTTATGTGACTAGG AACAGGCAGTTTTTAACAGGATCAGAGTTCTGCGTGGAGCGCAGGTTGGAACCATAGTGC AATGTGCTATGAGGTTTTGACCCAAGGACGCACTGAGCCCTACCCCCTGGCAGAGCCTCC ATTAAATGTATCGGATTCTCGCCGGGGGTAATTGGAGTTCCAGGTCCTGGGCGCTTCAGC TGAAAGCTACCACATCTGCAATGAATCTAGCAAAACACCCACGGGCCCACCCGAGCTCTC GGGAAACCCGGAGCAAGTTAACTCAAGTGTAGTTGATCAAATGGCAGTCTTTCAGAAAGA AGCGACACGCTCTCCCCCGCTGCGATTCTATCCAACCGGCAGCTCTGAATTTTTGCCAAA GGATTGATTTCCAACGCACGCGGAAGGTTTACAGGGAACCAGTGGGGGAGGGGAGGAGAA GGTACCTTGGAGGAGGTCGAGAGGAGGAGGAGCAGAAGGAGAAAATTACCAGACAGGCGG GGGAGGGAATTGGAGGCCCGGAAATCTTCCAGGATGCCTCAAATAACCCTCTCTTTCGTC TCAGAATTCAGCGCTCG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 222-334, - strand, RNAz p=0.723667 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 222-334, - strand, RNAz p=0.723667 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 18-207, gnl|bosTau2|chr20 (16306204-16306017) | |
| 18-207, gnl|canFam2|chr4 (66855786-66854373) | |
| 18-207, gnl|dasNov1|scaffold_710 (189934-188555) | |
| 18-207, gnl|echTel1|scaffold_308933 (49461-50718) | |
| 18-207, gnl|hg17|chr5 (50709575-50710953) | |
| 18-207, gnl|Hg17|chr5 (50710687-50710499) | |
| 18-207, gnl|loxAfr1|scaffold_3238 (37637-39017) | |
| 18-207, gnl|mm7|chr13 (113525522-113524181) | |
| 18-207, gnl|Mm7|chr13 (113524422-113524591) | |
| 18-207, gnl|oryCun1|scaffold_198559 (48764-47404) | |
| 18-207, gnl|panTro1|chr4 (65610899-65609521) | |
| 18-207, gnl|rheMac2|chr6 (48925461-48926843) | |
| 18-207, gnl|rn3|chr2 (47994472-47993053) | |
| 222-616, gnl|bosTau2|chr20 (16305963-16305567) | |
| 222-616, gnl|canFam2|chr4 (66855786-66854373) | |
| 222-616, gnl|dasNov1|scaffold_710 (189934-188555) | |
| 222-616, gnl|echTel1|scaffold_308933 (49461-50718) | |
| 222-616, gnl|hg17|chr5 (50709575-50710953) | |
| 222-616, gnl|Hg17|chr5 (50710463-50710070) | |
| 222-616, gnl|loxAfr1|scaffold_3238 (37637-39017) | |
| 222-616, gnl|mm7|chr13 (113525522-113524181) | |
| 222-616, gnl|Mm7|chr13 (113524629-113525021) | |
| 222-616, gnl|oryCun1|scaffold_198559 (48764-47404) | |
| 222-616, gnl|panTro1|chr4 (65610899-65609521) | |
| 222-616, gnl|rheMac2|chr6 (48925461-48926843) | |
| 222-616, gnl|rn3|chr2 (47994472-47993053) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-207, gnl|bosTau2|chr20 (16306204-16306017) | |
| 18-207, gnl|canFam2|chr4 (66855786-66854373) | |
| 18-207, gnl|dasNov1|scaffold_710 (189934-188555) | |
| 18-207, gnl|echTel1|scaffold_308933 (49461-50718) | |
| 18-207, gnl|hg17|chr5 (50709575-50710953) | |
| 18-207, gnl|Hg17|chr5 (50710687-50710499) | |
| 18-207, gnl|loxAfr1|scaffold_3238 (37637-39017) | |
| 18-207, gnl|mm7|chr13 (113525522-113524181) | |
| 18-207, gnl|Mm7|chr13 (113524422-113524591) | |
| 18-207, gnl|oryCun1|scaffold_198559 (48764-47404) | |
| 18-207, gnl|panTro1|chr4 (65610899-65609521) | |
| 18-207, gnl|rheMac2|chr6 (48925461-48926843) | |
| 18-207, gnl|rn3|chr2 (47994472-47993053) | |
| 222-616, gnl|bosTau2|chr20 (16305963-16305567) | |
| 222-616, gnl|canFam2|chr4 (66855786-66854373) | |
| 222-616, gnl|dasNov1|scaffold_710 (189934-188555) | |
| 222-616, gnl|echTel1|scaffold_308933 (49461-50718) | |
| 222-616, gnl|hg17|chr5 (50709575-50710953) | |
| 222-616, gnl|Hg17|chr5 (50710463-50710070) | |
| 222-616, gnl|loxAfr1|scaffold_3238 (37637-39017) | |
| 222-616, gnl|mm7|chr13 (113525522-113524181) | |
| 222-616, gnl|Mm7|chr13 (113524629-113525021) | |
| 222-616, gnl|oryCun1|scaffold_198559 (48764-47404) | |
| 222-616, gnl|panTro1|chr4 (65610899-65609521) | |
| 222-616, gnl|rheMac2|chr6 (48925461-48926843) | |
| 222-616, gnl|rn3|chr2 (47994472-47993053) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) |