Non-Coding RNA Search

rcst34_o20.y1

Sequence:


               
               AGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGCTACGACACCCTAAAGATCCAGAGCA
TCCAGGTCCCTGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGGTACCAGTTTCCTGT
ATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTCTGCGGGTGGGGCCA
CCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCCAGTCTTCAGCTTCT
ACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTTGGGGGGTGTGGACA
GCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGAGCTATACTGGCAGA
TTGGCATCGAGGAGTTCCTCATTGGTGATGAGGCCTCTGGCTGGTGCTCTGAGGGCTGCC
AGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGACTACCTGAGTGACC
TCGTGCAGGCCACGGGGGCCGAAGAAAACGAGTATGGAGAGTTTCTCGTGGACTGTAAAG
ACATCCAGAGCCTGCCCACCTTCACCTTCATCATCAATGGTGTGGAGTTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGCTACGACACCCTAAAGATCCAGAGCA
TCCAGGTCCCTGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGGTACCAGTTTCCTGT
ATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTCTGCGGGTGGGGCCA
CCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCCAGTCTTCAGCTTCT
ACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTTGGGGGGTGTGGACA
GCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGAGCTATACTGGCAGA
TTGGCATCGAGGAGTTCCTCATTGGTGATGAGGCCTCTGGCTGGTGCTCTGAGGGCTGCC
AGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGACTACCTGAGTGACC
TCGTGCAGGCCACGGGGGCCGAAGAAAACGAGTATGGAGAGTTTCTCGTGGACTGTAAAG
ACATCCAGAGCCTGCCCACCTTCACCTTCATCATCAATGGTGTGGAGTTCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9798666|dbj|BAB11755.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9798666|dbj|BAB11755.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               43-249, gnl|bosTau2|chr23 (15275047-15274841)
               

               
               43-249, gnl|Hg17|chr6 (41818213-41818007)
               

               
               43-249, gnl|Mm7|chr17 (45867134-45867337)
               


               
               374-521, gnl|bosTau2|chr23 (15272605-15272458)
               

               
               374-521, gnl|Hg17|chr6 (41815662-41815515)
               

               
               374-521, gnl|Mm7|chr17 (45869501-45869651)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-249, gnl|bosTau2|chr23 (15275047-15274841)
               

               
               43-249, gnl|Hg17|chr6 (41818213-41818007)
               

               
               43-249, gnl|Mm7|chr17 (45867134-45867337)
               


               
               374-521, gnl|bosTau2|chr23 (15272605-15272458)
               

               
               374-521, gnl|Hg17|chr6 (41815662-41815515)
               

               
               374-521, gnl|Mm7|chr17 (45869501-45869651)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	43-249, gnl\|bosTau2\|chr23 (15275047-15274841)
	43-249, gnl\|Hg17\|chr6 (41818213-41818007)
	43-249, gnl\|Mm7\|chr17 (45867134-45867337)

	374-521, gnl\|bosTau2\|chr23 (15272605-15272458)
	374-521, gnl\|Hg17\|chr6 (41815662-41815515)
	374-521, gnl\|Mm7\|chr17 (45869501-45869651)