Non-Coding RNA Search

rcst37_p6.y1

Sequence:


               
               ATTTTTACACATAGTTTGCACGTTGCAGCTCATTTTACAGAGGCTTCTGGCACTTTCCCG
TGGCTCCATAAGATGATGGAATGTGGTTGTCCGTGGGCAGAGTGGGAGGGAGGGCCGTCC
TGTGGGCTGTTACAGCAAATAGATGGTACCACGGGTCCCAAACCCAGAGATGCCCAGTTG
ATGGCCTCAAGCCAGCAGGAAGAGCCATCCAGAGCCTGGCTGGAGTCCAGCAGAGTCTGA
GTCCTTCCATGTGCGGCCTGGTGCCAGTGGGGATGGCCCACGGTATGTGATGGGCATGGC
GCCAGGGGGACATTTGAGGGCCCCCATGTTCCATGCCACGTGGGGCAGAAGCGGACCTAC
CCCCGTGACGTGTCAGGGGAAGCCCCGCATGGTAGGTGATGGTGGGACCCCTTGTTCTTC
ATTGCCGTGCCAACAGATGCCCACTCCCTGGGCACGTGGCATCCCGCCGGGGGTGAGTTC
AACCTTCCACGTGTTGGCGTGGTGCCGGGGGCACGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTACACATAGTTTGCACGTTGCAGCTCATTTTACAGAGGCTTCTGGCACTTTCCCG
TGGCTCCATAAGATGATGGAATGTGGTTGTCCGTGGGCAGAGTGGGAGGGAGGGCCGTCC
TGTGGGCTGTTACAGCAAATAGATGGTACCACGGGTCCCAAACCCAGAGATGCCCAGTTG
ATGGCCTCAAGCCAGCAGGAAGAGCCATCCAGAGCCTGGCTGGAGTCCAGCAGAGTCTGA
GTCCTTCCATGTGCGGCCTGGTGCCAGTGGGGATGGCCCACGGTATGTGATGGGCATGGC
GCCAGGGGGACATTTGAGGGCCCCCATGTTCCATGCCACGTGGGGCAGAAGCGGACCTAC
CCCCGTGACGTGTCAGGGGAAGCCCCGCATGGTAGGTGATGGTGGGACCCCTTGTTCTTC
ATTGCCGTGCCAACAGATGCCCACTCCCTGGGCACGTGGCATCCCGCCGGGGGTGAGTTC
AACCTTCCACGTGTTGGCGTGGTGCCGGGGGCACGGAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               157-391, - strand, RNAz p=0.988865
               

               
               218-321, - strand, RNAz p=0.995885

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-391, - strand, RNAz p=0.988865
               

               
               218-321, - strand, RNAz p=0.995885

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               163-266, - strand, RNAmicro p=0.980352
               

               
               77-197, + strand, RNAmicro p=0.957164

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               163-266, - strand, RNAmicro p=0.980352
               

               
               77-197, + strand, RNAmicro p=0.957164

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-516, gnl|bosTau2|chr16 (22562698-22563216)
               

               
               1-516, gnl|canFam2|chr2 (88125257-88124391)
               

               
               1-516, gnl|dasNov1|scaffold_28662 (19286-18423)
               

               
               1-516, gnl|echTel1|scaffold_283155 (1959-2789)
               

               
               1-516, gnl|hg17|chr1 (10722005-10722850)
               

               
               1-516, gnl|Hg17|chr1 (10722739-10722222)
               

               
               1-516, gnl|mm7|chr4 (147857966-147857158)
               

               
               1-516, gnl|Mm7|chr4 (147857233-147857739)
               

               
               1-516, gnl|monDom2|scaffold_683 (12459-11553)
               

               
               1-516, gnl|panTro1|chr1 (10920159-10921005)
               

               
               1-516, gnl|rheMac2|chr1 (13820676-13821522)
               

               
               1-516, gnl|rn3|chr5 (165957178-165956339)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr16 (22562698-22563216)
               

               
               1-516, gnl|canFam2|chr2 (88125257-88124391)
               

               
               1-516, gnl|dasNov1|scaffold_28662 (19286-18423)
               

               
               1-516, gnl|echTel1|scaffold_283155 (1959-2789)
               

               
               1-516, gnl|hg17|chr1 (10722005-10722850)
               

               
               1-516, gnl|Hg17|chr1 (10722739-10722222)
               

               
               1-516, gnl|mm7|chr4 (147857966-147857158)
               

               
               1-516, gnl|Mm7|chr4 (147857233-147857739)
               

               
               1-516, gnl|monDom2|scaffold_683 (12459-11553)
               

               
               1-516, gnl|panTro1|chr1 (10920159-10921005)
               

               
               1-516, gnl|rheMac2|chr1 (13820676-13821522)
               

               
               1-516, gnl|rn3|chr5 (165957178-165956339)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	157-391, - strand, RNAz p=0.988865
	218-321, - strand, RNAz p=0.995885

	163-266, - strand, RNAmicro p=0.980352
	77-197, + strand, RNAmicro p=0.957164

	1-516, gnl\|bosTau2\|chr16 (22562698-22563216)
	1-516, gnl\|canFam2\|chr2 (88125257-88124391)
	1-516, gnl\|dasNov1\|scaffold_28662 (19286-18423)
	1-516, gnl\|echTel1\|scaffold_283155 (1959-2789)
	1-516, gnl\|hg17\|chr1 (10722005-10722850)
	1-516, gnl\|Hg17\|chr1 (10722739-10722222)
	1-516, gnl\|mm7\|chr4 (147857966-147857158)
	1-516, gnl\|Mm7\|chr4 (147857233-147857739)
	1-516, gnl\|monDom2\|scaffold_683 (12459-11553)
	1-516, gnl\|panTro1\|chr1 (10920159-10921005)
	1-516, gnl\|rheMac2\|chr1 (13820676-13821522)
	1-516, gnl\|rn3\|chr5 (165957178-165956339)