Non-Coding RNA Search

rcst38_a1B02.y1

Sequence:


               
               TTATTCTTTTAACCTATATTGTATGACTGTTGTACAAGTCTAGGTCCTGTTCTGTTGCAC
ACTTAATCTTTACCAGTAAAATAAGCACCAAAAAGTTAATACTAGTTTGGCTGAAAGAAT
GTTCTGCAGTAAAACTACTTATATGGGAAAGAGATGACTTAGTTTATTCAATATTTTTCT
TTTGAAACATCTCATTACTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTCTTTTAACCTATATTGTATGACTGTTGTACAAGTCTAGGTCCTGTTCTGTTGCAC
ACTTAATCTTTACCAGTAAAATAAGCACCAAAAAGTTAATACTAGTTTGGCTGAAAGAAT
GTTCTGCAGTAAAACTACTTATATGGGAAAGAGATGACTTAGTTTATTCAATATTTTTCT
TTTGAAACATCTCATTACTAAC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               5-199, gnl|bosTau2|chr11 (15793954-15794150)
               

               
               5-199, gnl|canFam2|chr17 (34108251-34109101)
               

               
               5-199, gnl|echTel1|scaffold_205468 (2249-3072)
               

               
               5-199, gnl|galGal2|chrUn (121244525-121245340)
               

               
               5-199, gnl|hg17|chr2 (39120557-39121389)
               

               
               5-199, gnl|Hg17|chr2 (39121350-39121163)
               

               
               5-199, gnl|loxAfr1|scaffold_11207 (57332-58172)
               

               
               5-199, gnl|mm7|chr17 (78689940-78690768)
               

               
               5-199, gnl|Mm7|chr17 (78690732-78690545)
               

               
               5-199, gnl|monDom2|scaffold_23 (42254449-42255333)
               

               
               5-199, gnl|oryCun1|scaffold_182344 (5738-4911)
               

               
               5-199, gnl|panTro1|chr12 (40615975-40616810)
               

               
               5-199, gnl|rheMac2|chr13 (38969247-38970071)
               

               
               5-199, gnl|rn3|chr6 (3306857-3307621)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-199, gnl|bosTau2|chr11 (15793954-15794150)
               

               
               5-199, gnl|canFam2|chr17 (34108251-34109101)
               

               
               5-199, gnl|echTel1|scaffold_205468 (2249-3072)
               

               
               5-199, gnl|galGal2|chrUn (121244525-121245340)
               

               
               5-199, gnl|hg17|chr2 (39120557-39121389)
               

               
               5-199, gnl|Hg17|chr2 (39121350-39121163)
               

               
               5-199, gnl|loxAfr1|scaffold_11207 (57332-58172)
               

               
               5-199, gnl|mm7|chr17 (78689940-78690768)
               

               
               5-199, gnl|Mm7|chr17 (78690732-78690545)
               

               
               5-199, gnl|monDom2|scaffold_23 (42254449-42255333)
               

               
               5-199, gnl|oryCun1|scaffold_182344 (5738-4911)
               

               
               5-199, gnl|panTro1|chr12 (40615975-40616810)
               

               
               5-199, gnl|rheMac2|chr13 (38969247-38970071)
               

               
               5-199, gnl|rn3|chr6 (3306857-3307621)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	5-199, gnl\|bosTau2\|chr11 (15793954-15794150)
	5-199, gnl\|canFam2\|chr17 (34108251-34109101)
	5-199, gnl\|echTel1\|scaffold_205468 (2249-3072)
	5-199, gnl\|galGal2\|chrUn (121244525-121245340)
	5-199, gnl\|hg17\|chr2 (39120557-39121389)
	5-199, gnl\|Hg17\|chr2 (39121350-39121163)
	5-199, gnl\|loxAfr1\|scaffold_11207 (57332-58172)
	5-199, gnl\|mm7\|chr17 (78689940-78690768)
	5-199, gnl\|Mm7\|chr17 (78690732-78690545)
	5-199, gnl\|monDom2\|scaffold_23 (42254449-42255333)
	5-199, gnl\|oryCun1\|scaffold_182344 (5738-4911)
	5-199, gnl\|panTro1\|chr12 (40615975-40616810)
	5-199, gnl\|rheMac2\|chr13 (38969247-38970071)
	5-199, gnl\|rn3\|chr6 (3306857-3307621)