Non-Coding RNA Search

rcte05_i21.y1

Sequence:


               
               CGTTTGAGGAAGAGCTGCTTCTCCATCGCCACTTCCTGGACAAAAAGCTGATACTGTCCC
CTGGCAAGAGCTTCATGTGTAAGGATCCTGGCTGGTTCCGCCTCGTCTTTGCAGACAACC
ACCTCCTGCTAAGAAGCGCCATGCATCGGTTCCATCAGGTGCTACTGGAACAGGAGAGGA
ATTGGACAAGGAGGCAACTGGAGGACGCAATAGAGGAGGACTTGCTTACCTCCAACACAG
CGGCTGCAACCAATCTGAAAGGCTGAACACTGGGATCCTCCAGACATGAGCCCCTTAAGC
TCACCATCTGTCATTCCAGAAGCTTTGCATCTTTTTAGTCTCTGCTAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTTGAGGAAGAGCTGCTTCTCCATCGCCACTTCCTGGACAAAAAGCTGATACTGTCCC
CTGGCAAGAGCTTCATGTGTAAGGATCCTGGCTGGTTCCGCCTCGTCTTTGCAGACAACC
ACCTCCTGCTAAGAAGCGCCATGCATCGGTTCCATCAGGTGCTACTGGAACAGGAGAGGA
ATTGGACAAGGAGGCAACTGGAGGACGCAATAGAGGAGGACTTGCTTACCTCCAACACAG
CGGCTGCAACCAATCTGAAAGGCTGAACACTGGGATCCTCCAGACATGAGCCCCTTAAGC
TCACCATCTGTCATTCCAGAAGCTTTGCATCTTTTTAGTCTCTGCTAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-101, - strand, RNAz p=0.831465

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-101, - strand, RNAz p=0.831465

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-138, gnl|bosTau2|chr15 (46018068-46017931)
               

               
               1-138, gnl|canFam2|chr18 (48206738-48206622)
               

               
               1-138, gnl|dasNov1|scaffold_5726 (121656-121772)
               

               
               1-138, gnl|echTel1|scaffold_266072 (23016-23132)
               

               
               1-138, gnl|fr1|chrUn (81846279-81846395)
               

               
               1-138, gnl|hg17|chr11 (44036670-44036786)
               

               
               1-138, gnl|Hg17|chr11 (44036688-44036825)
               

               
               1-138, gnl|loxAfr1|scaffold_99759 (1527-1423)
               

               
               1-138, gnl|mm7|chr2 (93707570-93707454)
               

               
               1-138, gnl|Mm7|chr2 (93707550-93707413)
               

               
               1-138, gnl|monDom2|scaffold_33 (9450191-9450307)
               

               
               1-138, gnl|oryCun1|scaffold_198186 (56587-56703)
               

               
               1-138, gnl|panTro1|chr9 (44533726-44533842)
               

               
               1-138, gnl|rheMac2|chr14 (28053649-28053533)
               

               
               1-138, gnl|rn3|chr3 (78170775-78170659)
               

               
               1-138, gnl|tetNig1|chr13 (5131862-5131978)
               

               
               1-138, gnl|xenTro1|scaffold_266 (338471-338587)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-138, gnl|bosTau2|chr15 (46018068-46017931)
               

               
               1-138, gnl|canFam2|chr18 (48206738-48206622)
               

               
               1-138, gnl|dasNov1|scaffold_5726 (121656-121772)
               

               
               1-138, gnl|echTel1|scaffold_266072 (23016-23132)
               

               
               1-138, gnl|fr1|chrUn (81846279-81846395)
               

               
               1-138, gnl|hg17|chr11 (44036670-44036786)
               

               
               1-138, gnl|Hg17|chr11 (44036688-44036825)
               

               
               1-138, gnl|loxAfr1|scaffold_99759 (1527-1423)
               

               
               1-138, gnl|mm7|chr2 (93707570-93707454)
               

               
               1-138, gnl|Mm7|chr2 (93707550-93707413)
               

               
               1-138, gnl|monDom2|scaffold_33 (9450191-9450307)
               

               
               1-138, gnl|oryCun1|scaffold_198186 (56587-56703)
               

               
               1-138, gnl|panTro1|chr9 (44533726-44533842)
               

               
               1-138, gnl|rheMac2|chr14 (28053649-28053533)
               

               
               1-138, gnl|rn3|chr3 (78170775-78170659)
               

               
               1-138, gnl|tetNig1|chr13 (5131862-5131978)
               

               
               1-138, gnl|xenTro1|scaffold_266 (338471-338587)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-138, gnl\|bosTau2\|chr15 (46018068-46017931)
	1-138, gnl\|canFam2\|chr18 (48206738-48206622)
	1-138, gnl\|dasNov1\|scaffold_5726 (121656-121772)
	1-138, gnl\|echTel1\|scaffold_266072 (23016-23132)
	1-138, gnl\|fr1\|chrUn (81846279-81846395)
	1-138, gnl\|hg17\|chr11 (44036670-44036786)
	1-138, gnl\|Hg17\|chr11 (44036688-44036825)
	1-138, gnl\|loxAfr1\|scaffold_99759 (1527-1423)
	1-138, gnl\|mm7\|chr2 (93707570-93707454)
	1-138, gnl\|Mm7\|chr2 (93707550-93707413)
	1-138, gnl\|monDom2\|scaffold_33 (9450191-9450307)
	1-138, gnl\|oryCun1\|scaffold_198186 (56587-56703)
	1-138, gnl\|panTro1\|chr9 (44533726-44533842)
	1-138, gnl\|rheMac2\|chr14 (28053649-28053533)
	1-138, gnl\|rn3\|chr3 (78170775-78170659)
	1-138, gnl\|tetNig1\|chr13 (5131862-5131978)
	1-138, gnl\|xenTro1\|scaffold_266 (338471-338587)