Non-Coding RNA Search

rcte05_p10.y1

Sequence:


               
               GAGCAGTTCTTTACCTCTTGGTCATGAGGACAGCAGCAGGTATAGCGAGCAGCTGAGGAC
AGATGAAGAAGAGAGCTCAAGTATAGCATTTGGAGCCTCTGATATCAAATAATTACTGTA
TGAGGATGAGCAGGATTTCAAGGATTATGTAAACCTGGGCCCTCTGGAAGTGAAGCTCAT
GACTGTGGAGAGCAAGAGGAAGCCCATCCATTTCCAAGAAAAGGAAATTCCAGTCAAATT
CTATGAAGATGTCAGGAGCCCAGAAAGCCACATCACATATAAAATGATGAAGTCTTTTCT
CTAAGACGGAAAGCTGCAAAGTAAAAACAACTTCCTATGCATTTTCTTTGGGAACTGAGG
TATATCAGTTGCCCATTTTATTTACGCTTTGGTCCATTTTTAAAGCAACTGTTATTTCTA
AAGATCCTAATTACATTTAAAGTCCTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGTTCTTTACCTCTTGGTCATGAGGACAGCAGCAGGTATAGCGAGCAGCTGAGGAC
AGATGAAGAAGAGAGCTCAAGTATAGCATTTGGAGCCTCTGATATCAAATAATTACTGTA
TGAGGATGAGCAGGATTTCAAGGATTATGTAAACCTGGGCCCTCTGGAAGTGAAGCTCAT
GACTGTGGAGAGCAAGAGGAAGCCCATCCATTTCCAAGAAAAGGAAATTCCAGTCAAATT
CTATGAAGATGTCAGGAGCCCAGAAAGCCACATCACATATAAAATGATGAAGTCTTTTCT
CTAAGACGGAAAGCTGCAAAGTAAAAACAACTTCCTATGCATTTTCTTTGGGAACTGAGG
TATATCAGTTGCCCATTTTATTTACGCTTTGGTCCATTTTTAAAGCAACTGTTATTTCTA
AAGATCCTAATTACATTTAAAGTCCTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               180-296, - strand, RNAz p=0.699783
               

               
               300-444, - strand, RNAz p=0.912176

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-296, - strand, RNAz p=0.699783
               

               
               300-444, - strand, RNAz p=0.912176

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               141-444, gnl|bosTau2|chr29 (4877488-4877785)
               

               
               141-444, gnl|canFam2|chr21 (16554180-16553864)
               

               
               141-444, gnl|dasNov1|scaffold_41422 (6620-6941)
               

               
               141-444, gnl|hg17|chr11 (85307943-85308265)
               

               
               141-444, gnl|Hg17|chr11 (85308038-85308344)
               

               
               141-444, gnl|loxAfr1|scaffold_2975 (11669-11987)
               

               
               141-444, gnl|mm7|chr7 (86231054-86230757)
               

               
               141-444, gnl|Mm7|chr7 (86230971-86230679)
               

               
               141-444, gnl|monDom2|scaffold_46 (1820602-1820268)
               

               
               141-444, gnl|oryCun1|scaffold_205662 (38793-38482)
               

               
               141-444, gnl|panTro1|chr9 (86954947-86955269)
               

               
               141-444, gnl|rheMac2|chr14 (84253720-84254043)
               

               
               141-444, gnl|rn3|chr1 (146948409-146948114)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               141-444, gnl|bosTau2|chr29 (4877488-4877785)
               

               
               141-444, gnl|canFam2|chr21 (16554180-16553864)
               

               
               141-444, gnl|dasNov1|scaffold_41422 (6620-6941)
               

               
               141-444, gnl|hg17|chr11 (85307943-85308265)
               

               
               141-444, gnl|Hg17|chr11 (85308038-85308344)
               

               
               141-444, gnl|loxAfr1|scaffold_2975 (11669-11987)
               

               
               141-444, gnl|mm7|chr7 (86231054-86230757)
               

               
               141-444, gnl|Mm7|chr7 (86230971-86230679)
               

               
               141-444, gnl|monDom2|scaffold_46 (1820602-1820268)
               

               
               141-444, gnl|oryCun1|scaffold_205662 (38793-38482)
               

               
               141-444, gnl|panTro1|chr9 (86954947-86955269)
               

               
               141-444, gnl|rheMac2|chr14 (84253720-84254043)
               

               
               141-444, gnl|rn3|chr1 (146948409-146948114)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	180-296, - strand, RNAz p=0.699783
	300-444, - strand, RNAz p=0.912176

	141-444, gnl\|bosTau2\|chr29 (4877488-4877785)
	141-444, gnl\|canFam2\|chr21 (16554180-16553864)
	141-444, gnl\|dasNov1\|scaffold_41422 (6620-6941)
	141-444, gnl\|hg17\|chr11 (85307943-85308265)
	141-444, gnl\|Hg17\|chr11 (85308038-85308344)
	141-444, gnl\|loxAfr1\|scaffold_2975 (11669-11987)
	141-444, gnl\|mm7\|chr7 (86231054-86230757)
	141-444, gnl\|Mm7\|chr7 (86230971-86230679)
	141-444, gnl\|monDom2\|scaffold_46 (1820602-1820268)
	141-444, gnl\|oryCun1\|scaffold_205662 (38793-38482)
	141-444, gnl\|panTro1\|chr9 (86954947-86955269)
	141-444, gnl\|rheMac2\|chr14 (84253720-84254043)
	141-444, gnl\|rn3\|chr1 (146948409-146948114)