Non-Coding RNA Search

rcte06_d9.y1

Sequence:


               
               CTCTCCTCGGGGAGAAAAGCTTTCCCTGTTCTGATGGAGGAAGACCTAGATTTAAAACAG
GAGAGAGGCAGCTGATGAAAACCACATGTGCGCCTTGGATCTGTGCTACACCTGTTAGTC
TTGCATTTGTCATGTTTCTGGGAAGCATTTTTATTTACAAAAACGGCTGTTTCCACACGT
GGTTGTGGTTGCCTGCTTCTGCACATGTGAAAACTTTTACATCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCCTCGGGGAGAAAAGCTTTCCCTGTTCTGATGGAGGAAGACCTAGATTTAAAACAG
GAGAGAGGCAGCTGATGAAAACCACATGTGCGCCTTGGATCTGTGCTACACCTGTTAGTC
TTGCATTTGTCATGTTTCTGGGAAGCATTTTTATTTACAAAAACGGCTGTTTCCACACGT
GGTTGTGGTTGCCTGCTTCTGCACATGTGAAAACTTTTACATCACC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               5-225, gnl|bosTau2|chr7 (5872750-5872969)
               

               
               5-225, gnl|canFam2|chr20 (48924969-48924603)
               

               
               5-225, gnl|echTel1|scaffold_321018 (42887-42556)
               

               
               5-225, gnl|hg17|chr19 (16600890-16601272)
               

               
               5-225, gnl|Hg17|chr19 (16601135-16601355)
               

               
               5-225, gnl|loxAfr1|scaffold_8936 (30181-30558)
               

               
               5-225, gnl|mm7|chr8 (71072320-71072660)
               

               
               5-225, gnl|panTro1|chr20 (17286671-17287052)
               

               
               5-225, gnl|rheMac2|chr19 (16175863-16176245)
               

               
               5-225, gnl|rn3|chr16 (17715624-17715311)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-225, gnl|bosTau2|chr7 (5872750-5872969)
               

               
               5-225, gnl|canFam2|chr20 (48924969-48924603)
               

               
               5-225, gnl|echTel1|scaffold_321018 (42887-42556)
               

               
               5-225, gnl|hg17|chr19 (16600890-16601272)
               

               
               5-225, gnl|Hg17|chr19 (16601135-16601355)
               

               
               5-225, gnl|loxAfr1|scaffold_8936 (30181-30558)
               

               
               5-225, gnl|mm7|chr8 (71072320-71072660)
               

               
               5-225, gnl|panTro1|chr20 (17286671-17287052)
               

               
               5-225, gnl|rheMac2|chr19 (16175863-16176245)
               

               
               5-225, gnl|rn3|chr16 (17715624-17715311)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	5-225, gnl\|bosTau2\|chr7 (5872750-5872969)
	5-225, gnl\|canFam2\|chr20 (48924969-48924603)
	5-225, gnl\|echTel1\|scaffold_321018 (42887-42556)
	5-225, gnl\|hg17\|chr19 (16600890-16601272)
	5-225, gnl\|Hg17\|chr19 (16601135-16601355)
	5-225, gnl\|loxAfr1\|scaffold_8936 (30181-30558)
	5-225, gnl\|mm7\|chr8 (71072320-71072660)
	5-225, gnl\|panTro1\|chr20 (17286671-17287052)
	5-225, gnl\|rheMac2\|chr19 (16175863-16176245)
	5-225, gnl\|rn3\|chr16 (17715624-17715311)