Non-Coding RNA Search

rcte06_n5.y1

Sequence:


               
               GCCGCTGGCTGCCTGCAGTCTGTTCAAGTGGGTATCATGGTTCGAAGGCATCAACTTCTC
CCAGCAACGTCCCAAGTGCAGCTGCACAAATCCCAGAAGCATGAGTCCCCTGAGTGATCA
AGCACCCGAATTCAAGGTTCCAAAAACTCAGCCTGTCGGAAATATCAGAGTCTTAAAACA
ATCACGTTTGAAAACACTGTTGTTGTAAGGATTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTGGCTGCCTGCAGTCTGTTCAAGTGGGTATCATGGTTCGAAGGCATCAACTTCTC
CCAGCAACGTCCCAAGTGCAGCTGCACAAATCCCAGAAGCATGAGTCCCCTGAGTGATCA
AGCACCCGAATTCAAGGTTCCAAAAACTCAGCCTGTCGGAAATATCAGAGTCTTAAAACA
ATCACGTTTGAAAACACTGTTGTTGTAAGGATTTTCTT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               78-218, gnl|bosTau2|chr3 (42054248-42054388)
               

               
               78-218, gnl|canFam2|chr6 (60314326-60314129)
               

               
               78-218, gnl|dasNov1|scaffold_21682 (48864-49059)
               

               
               78-218, gnl|echTel1|scaffold_196095 (3730-3531)
               

               
               78-218, gnl|hg17|chr1 (91803303-91803497)
               

               
               78-218, gnl|Hg17|chr1 (91803528-91803388)
               

               
               78-218, gnl|mm7|chr5 (106251791-106252000)
               

               
               78-218, gnl|Mm7|chr5 (106252029-106251877)
               

               
               78-218, gnl|monDom2|scaffold_87 (1975362-1975163)
               

               
               78-218, gnl|oryCun1|scaffold_200956 (73401-73596)
               

               
               78-218, gnl|panTro1|chr1_random (81346217-81346023)
               

               
               78-218, gnl|rheMac2|chr1 (94624649-94624843)
               

               
               78-218, gnl|rn3|chr14 (3277611-3277410)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-218, gnl|bosTau2|chr3 (42054248-42054388)
               

               
               78-218, gnl|canFam2|chr6 (60314326-60314129)
               

               
               78-218, gnl|dasNov1|scaffold_21682 (48864-49059)
               

               
               78-218, gnl|echTel1|scaffold_196095 (3730-3531)
               

               
               78-218, gnl|hg17|chr1 (91803303-91803497)
               

               
               78-218, gnl|Hg17|chr1 (91803528-91803388)
               

               
               78-218, gnl|mm7|chr5 (106251791-106252000)
               

               
               78-218, gnl|Mm7|chr5 (106252029-106251877)
               

               
               78-218, gnl|monDom2|scaffold_87 (1975362-1975163)
               

               
               78-218, gnl|oryCun1|scaffold_200956 (73401-73596)
               

               
               78-218, gnl|panTro1|chr1_random (81346217-81346023)
               

               
               78-218, gnl|rheMac2|chr1 (94624649-94624843)
               

               
               78-218, gnl|rn3|chr14 (3277611-3277410)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	78-218, gnl\|bosTau2\|chr3 (42054248-42054388)
	78-218, gnl\|canFam2\|chr6 (60314326-60314129)
	78-218, gnl\|dasNov1\|scaffold_21682 (48864-49059)
	78-218, gnl\|echTel1\|scaffold_196095 (3730-3531)
	78-218, gnl\|hg17\|chr1 (91803303-91803497)
	78-218, gnl\|Hg17\|chr1 (91803528-91803388)
	78-218, gnl\|mm7\|chr5 (106251791-106252000)
	78-218, gnl\|Mm7\|chr5 (106252029-106251877)
	78-218, gnl\|monDom2\|scaffold_87 (1975362-1975163)
	78-218, gnl\|oryCun1\|scaffold_200956 (73401-73596)
	78-218, gnl\|panTro1\|chr1_random (81346217-81346023)
	78-218, gnl\|rheMac2\|chr1 (94624649-94624843)
	78-218, gnl\|rn3\|chr14 (3277611-3277410)