Non-Coding RNA Search

rcte07_b4.y1

Sequence:


               
               GTTGGCGATAAGACTCGATATGAGCTCATCTCTATCATGACAGGTCTACGTTGACCAGCG
TCTATCATGATTGACACAAGTCACAACTGGGCAATTGCGTTTTCGCTTTGTTTTACTGTC
AGCAATGGTCTTTAAGGTTGATTCATCGCCAGGTATCTCATGAATAAGTCTGATCTGGTC
TTGGCAAACCTTTAAGAAGTCAGTTAGTCTTTCAAGGATCATGACTTCCCAGCCTTTTTC
TAGAACTGAAAACATCACAGTGAGGGCCAAATGAATGGCAACACCTGAGCGTATTTCAAC
AGGCTCCTCTCCTTGCAGGACAACATACAAGAGGTTATCCATGATGCTGAAATAGTTGGA
GCCAATAGGCTCATTCAGCAGTGAGGAAGCTGATTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCGATAAGACTCGATATGAGCTCATCTCTATCATGACAGGTCTACGTTGACCAGCG
TCTATCATGATTGACACAAGTCACAACTGGGCAATTGCGTTTTCGCTTTGTTTTACTGTC
AGCAATGGTCTTTAAGGTTGATTCATCGCCAGGTATCTCATGAATAAGTCTGATCTGGTC
TTGGCAAACCTTTAAGAAGTCAGTTAGTCTTTCAAGGATCATGACTTCCCAGCCTTTTTC
TAGAACTGAAAACATCACAGTGAGGGCCAAATGAATGGCAACACCTGAGCGTATTTCAAC
AGGCTCCTCTCCTTGCAGGACAACATACAAGAGGTTATCCATGATGCTGAAATAGTTGGA
GCCAATAGGCTCATTCAGCAGTGAGGAAGCTGATTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               34-144, - strand, RNAz p=0.713074
               

               
               206-396, - strand, RNAz p=0.732701
               

               
               299-396, - strand, RNAz p=0.563753

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               34-144, - strand, RNAz p=0.713074
               

               
               206-396, - strand, RNAz p=0.732701
               

               
               299-396, - strand, RNAz p=0.563753

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of AY074797, -
               

               
               3' of AY074797, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY074797, -
               

               
               3' of AY074797, -

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               9-396, gnl|bosTau2|chr1 (49708907-49709293)
               

               
               9-396, gnl|canFam2|chr12 (22333555-22334308)
               

               
               9-396, gnl|dasNov1|scaffold_168938 (4444-3687)
               

               
               9-396, gnl|echTel1|scaffold_297104 (764-6)
               

               
               9-396, gnl|galGal2|chr3 (105696297-105695558)
               

               
               9-396, gnl|hg17|chr6 (51631856-51632612)
               

               
               9-396, gnl|Hg17|chr6 (51631933-51632322)
               

               
               9-396, gnl|mm7|chr1 (20307688-20308444)
               

               
               9-396, gnl|Mm7|chr1 (20307765-20308154)
               

               
               9-396, gnl|monDom2|scaffold_0 (186064564-186063814)
               

               
               9-396, gnl|oryCun1|scaffold_208882 (55241-54482)
               

               
               9-396, gnl|panTro1|chr5 (52611389-52612145)
               

               
               9-396, gnl|rheMac2|chr4 (51336260-51337016)
               

               
               9-396, gnl|rn3|chr9 (18884844-18885600)
               

               
               9-396, gnl|xenTro1|scaffold_55 (1523968-1524725)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-396, gnl|bosTau2|chr1 (49708907-49709293)
               

               
               9-396, gnl|canFam2|chr12 (22333555-22334308)
               

               
               9-396, gnl|dasNov1|scaffold_168938 (4444-3687)
               

               
               9-396, gnl|echTel1|scaffold_297104 (764-6)
               

               
               9-396, gnl|galGal2|chr3 (105696297-105695558)
               

               
               9-396, gnl|hg17|chr6 (51631856-51632612)
               

               
               9-396, gnl|Hg17|chr6 (51631933-51632322)
               

               
               9-396, gnl|mm7|chr1 (20307688-20308444)
               

               
               9-396, gnl|Mm7|chr1 (20307765-20308154)
               

               
               9-396, gnl|monDom2|scaffold_0 (186064564-186063814)
               

               
               9-396, gnl|oryCun1|scaffold_208882 (55241-54482)
               

               
               9-396, gnl|panTro1|chr5 (52611389-52612145)
               

               
               9-396, gnl|rheMac2|chr4 (51336260-51337016)
               

               
               9-396, gnl|rn3|chr9 (18884844-18885600)
               

               
               9-396, gnl|xenTro1|scaffold_55 (1523968-1524725)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	34-144, - strand, RNAz p=0.713074
	206-396, - strand, RNAz p=0.732701
	299-396, - strand, RNAz p=0.563753

	9-396, gnl\|bosTau2\|chr1 (49708907-49709293)
	9-396, gnl\|canFam2\|chr12 (22333555-22334308)
	9-396, gnl\|dasNov1\|scaffold_168938 (4444-3687)
	9-396, gnl\|echTel1\|scaffold_297104 (764-6)
	9-396, gnl\|galGal2\|chr3 (105696297-105695558)
	9-396, gnl\|hg17\|chr6 (51631856-51632612)
	9-396, gnl\|Hg17\|chr6 (51631933-51632322)
	9-396, gnl\|mm7\|chr1 (20307688-20308444)
	9-396, gnl\|Mm7\|chr1 (20307765-20308154)
	9-396, gnl\|monDom2\|scaffold_0 (186064564-186063814)
	9-396, gnl\|oryCun1\|scaffold_208882 (55241-54482)
	9-396, gnl\|panTro1\|chr5 (52611389-52612145)
	9-396, gnl\|rheMac2\|chr4 (51336260-51337016)
	9-396, gnl\|rn3\|chr9 (18884844-18885600)
	9-396, gnl\|xenTro1\|scaffold_55 (1523968-1524725)