Non-Coding RNA Search

rcte09_h18.y1

Sequence:


               
               AACTAATGAAAGAACTCAAACAGCTACAGCAAGAGGACCTGGCACGCAGTGAGACAGACA
GTAGCACGAATGCCACCACATCTAGTTGAACTTCCATACAAACGCAATGAGATGAAAGAA
GACTGGCAGAGAGAGCTGGAATTTGCCTTTGAAGATATGTACAATGCAGACAGAAAAGTG
AAAGGAAACCTGATTTTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTAATGAAAGAACTCAAACAGCTACAGCAAGAGGACCTGGCACGCAGTGAGACAGACA
GTAGCACGAATGCCACCACATCTAGTTGAACTTCCATACAAACGCAATGAGATGAAAGAA
GACTGGCAGAGAGAGCTGGAATTTGCCTTTGAAGATATGTACAATGCAGACAGAAAAGTG
AAAGGAAACCTGATTTTGCAC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-175, gnl|bosTau2|chr29 (511006-511179)
               

               
               1-175, gnl|canFam2|chr21 (10051885-10051672)
               

               
               1-175, gnl|dasNov1|scaffold_61874 (1401-1188)
               

               
               1-175, gnl|echTel1|scaffold_316886 (54915-54703)
               

               
               1-175, gnl|fr1|chrUn (188054697-188054900)
               

               
               1-175, gnl|galGal2|chr1 (177651149-177650938)
               

               
               1-175, gnl|hg17|chr11 (93056362-93056576)
               

               
               1-175, gnl|Hg17|chr11 (93056383-93056556)
               

               
               1-175, gnl|loxAfr1|scaffold_22050 (38463-38677)
               

               
               1-175, gnl|mm7|chr9 (15180245-15180041)
               

               
               1-175, gnl|Mm7|chr9 (15180220-15180047)
               

               
               1-175, gnl|monDom2|scaffold_15 (4362004-4361791)
               

               
               1-175, gnl|panTro1|chr9 (94957967-94958181)
               

               
               1-175, gnl|rheMac2|chr14 (92244046-92244260)
               

               
               1-175, gnl|rn3|chr8 (12138419-12138215)
               

               
               1-175, gnl|tetNig1|chr16 (8013247-8013460)
               

               
               1-175, gnl|xenTro1|scaffold_645 (96280-96066)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-175, gnl|bosTau2|chr29 (511006-511179)
               

               
               1-175, gnl|canFam2|chr21 (10051885-10051672)
               

               
               1-175, gnl|dasNov1|scaffold_61874 (1401-1188)
               

               
               1-175, gnl|echTel1|scaffold_316886 (54915-54703)
               

               
               1-175, gnl|fr1|chrUn (188054697-188054900)
               

               
               1-175, gnl|galGal2|chr1 (177651149-177650938)
               

               
               1-175, gnl|hg17|chr11 (93056362-93056576)
               

               
               1-175, gnl|Hg17|chr11 (93056383-93056556)
               

               
               1-175, gnl|loxAfr1|scaffold_22050 (38463-38677)
               

               
               1-175, gnl|mm7|chr9 (15180245-15180041)
               

               
               1-175, gnl|Mm7|chr9 (15180220-15180047)
               

               
               1-175, gnl|monDom2|scaffold_15 (4362004-4361791)
               

               
               1-175, gnl|panTro1|chr9 (94957967-94958181)
               

               
               1-175, gnl|rheMac2|chr14 (92244046-92244260)
               

               
               1-175, gnl|rn3|chr8 (12138419-12138215)
               

               
               1-175, gnl|tetNig1|chr16 (8013247-8013460)
               

               
               1-175, gnl|xenTro1|scaffold_645 (96280-96066)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-175, gnl\|bosTau2\|chr29 (511006-511179)
	1-175, gnl\|canFam2\|chr21 (10051885-10051672)
	1-175, gnl\|dasNov1\|scaffold_61874 (1401-1188)
	1-175, gnl\|echTel1\|scaffold_316886 (54915-54703)
	1-175, gnl\|fr1\|chrUn (188054697-188054900)
	1-175, gnl\|galGal2\|chr1 (177651149-177650938)
	1-175, gnl\|hg17\|chr11 (93056362-93056576)
	1-175, gnl\|Hg17\|chr11 (93056383-93056556)
	1-175, gnl\|loxAfr1\|scaffold_22050 (38463-38677)
	1-175, gnl\|mm7\|chr9 (15180245-15180041)
	1-175, gnl\|Mm7\|chr9 (15180220-15180047)
	1-175, gnl\|monDom2\|scaffold_15 (4362004-4361791)
	1-175, gnl\|panTro1\|chr9 (94957967-94958181)
	1-175, gnl\|rheMac2\|chr14 (92244046-92244260)
	1-175, gnl\|rn3\|chr8 (12138419-12138215)
	1-175, gnl\|tetNig1\|chr16 (8013247-8013460)
	1-175, gnl\|xenTro1\|scaffold_645 (96280-96066)