Non-Coding RNA Search

rcte10_b5.y1

Sequence:


               
               AGCGTTGAGATGCGGAGGAAAGGGGCACTTAGTAATGTGCTCTGAGGGCGATTTTGCTTT
AAAATAGAGCGGAACTGCAAATCAGACATTTTTGAACCTCTTCCTAGCCACCGATTGCTA
TGGTTACAAGTAGAGGCGCGACGAGGCAGGTGCAAGAACTGCTTGAGAGACTGATGAGCG
GCGCCCCAGGTCGCGGTCGAGCCCCATCCCAGCTAGTGCTTGGAAGGGTCGAGTCCCTCT
CTACAGTTAAGAAAAAATTCTAGATGGAAAAGCGTGTTTAGGAATTTAAGGTTTTTTCAA
ATCGTTTAAGTATAAGGTTGCATAAACTTGAGAAGTGTGCCTCCCAGAGAACACTCCAGA
AATCGTCACTGCTCCCCAAGGTTTCTGGACAGAAATTTATTTACAATTTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTTGAGATGCGGAGGAAAGGGGCACTTAGTAATGTGCTCTGAGGGCGATTTTGCTTT
AAAATAGAGCGGAACTGCAAATCAGACATTTTTGAACCTCTTCCTAGCCACCGATTGCTA
TGGTTACAAGTAGAGGCGCGACGAGGCAGGTGCAAGAACTGCTTGAGAGACTGATGAGCG
GCGCCCCAGGTCGCGGTCGAGCCCCATCCCAGCTAGTGCTTGGAAGGGTCGAGTCCCTCT
CTACAGTTAAGAAAAAATTCTAGATGGAAAAGCGTGTTTAGGAATTTAAGGTTTTTTCAA
ATCGTTTAAGTATAAGGTTGCATAAACTTGAGAAGTGTGCCTCCCAGAGAACACTCCAGA
AATCGTCACTGCTCCCCAAGGTTTCTGGACAGAAATTTATTTACAATTTCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               296-409, - strand, RNAz p=0.539172

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-409, - strand, RNAz p=0.539172

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-409, gnl|bosTau2|chr3 (24479727-24479300)
               

               
               1-409, gnl|canFam2|chr17 (54697800-54698357)
               

               
               1-409, gnl|dasNov1|scaffold_10825 (85855-85326)
               

               
               1-409, gnl|echTel1|scaffold_300711 (3016-3549)
               

               
               1-409, gnl|hg17|chr1 (114067411-114067948)
               

               
               1-409, gnl|Hg17|chr1 (114067475-114067880)
               

               
               1-409, gnl|loxAfr1|scaffold_6006 (21887-21336)
               

               
               1-409, gnl|mm7|chr3 (103708085-103707605)
               

               
               1-409, gnl|Mm7|chr3 (103708021-103707640)
               

               
               1-409, gnl|oryCun1|scaffold_207708 (83419-83930)
               

               
               1-409, gnl|panTro1|chr1 (113854817-113855355)
               

               
               1-409, gnl|rheMac2|chr1 (116797195-116797730)
               

               
               1-409, gnl|rn3|chr2 (199108896-199108457)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-409, gnl|bosTau2|chr3 (24479727-24479300)
               

               
               1-409, gnl|canFam2|chr17 (54697800-54698357)
               

               
               1-409, gnl|dasNov1|scaffold_10825 (85855-85326)
               

               
               1-409, gnl|echTel1|scaffold_300711 (3016-3549)
               

               
               1-409, gnl|hg17|chr1 (114067411-114067948)
               

               
               1-409, gnl|Hg17|chr1 (114067475-114067880)
               

               
               1-409, gnl|loxAfr1|scaffold_6006 (21887-21336)
               

               
               1-409, gnl|mm7|chr3 (103708085-103707605)
               

               
               1-409, gnl|Mm7|chr3 (103708021-103707640)
               

               
               1-409, gnl|oryCun1|scaffold_207708 (83419-83930)
               

               
               1-409, gnl|panTro1|chr1 (113854817-113855355)
               

               
               1-409, gnl|rheMac2|chr1 (116797195-116797730)
               

               
               1-409, gnl|rn3|chr2 (199108896-199108457)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-409, gnl\|bosTau2\|chr3 (24479727-24479300)
	1-409, gnl\|canFam2\|chr17 (54697800-54698357)
	1-409, gnl\|dasNov1\|scaffold_10825 (85855-85326)
	1-409, gnl\|echTel1\|scaffold_300711 (3016-3549)
	1-409, gnl\|hg17\|chr1 (114067411-114067948)
	1-409, gnl\|Hg17\|chr1 (114067475-114067880)
	1-409, gnl\|loxAfr1\|scaffold_6006 (21887-21336)
	1-409, gnl\|mm7\|chr3 (103708085-103707605)
	1-409, gnl\|Mm7\|chr3 (103708021-103707640)
	1-409, gnl\|oryCun1\|scaffold_207708 (83419-83930)
	1-409, gnl\|panTro1\|chr1 (113854817-113855355)
	1-409, gnl\|rheMac2\|chr1 (116797195-116797730)
	1-409, gnl\|rn3\|chr2 (199108896-199108457)