Non-Coding RNA Search

rcte10_h21.y1

Sequence:


               
               GAAATGTCCCTGACAATCCCAGGAGAAATCGCTTGCTTGCTTCTCTCAGCTCCAGCGGAA
CTCTGTTTCTGCTTCTATATTACAGCGTTTCGGGAGTGGGGGAGGGAGTTGGGGAGATAC
CAAGACAGGAAGCAAGGGTGTTGTTTTTCAGAAGTTTGGAGACTGATGAGAGAGACAGAC
TCATGACTGATACTAATCATTTTTCCTTCTATTTGTATCATTTTTAATAGTTGACAGTGC
ACTTACTCCTCACAAAAGCCCTGTGAAGTTGACATTACTAACTCCATTTTAAGGATGCTG
CTATTAAAAGCTGGAATGTGCTATGAAGGAGCTACTCTCTAAGGAATGGTGTGCTCCAGA
CTGAAAATTCCTCAAGTGACATGAATGAGATTAAGTAAGACCCTCGCTCAGGGACTGCCT
CATTGGTCTCAGTGTGGACAGCCAGCTGACTCAAGTGGAGCCTTTCCGGGAATGTACAAC
AGGACTGAGGGACTGAGCTTCAGTCCAGTTACTCACTTGAGTGGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGTCCCTGACAATCCCAGGAGAAATCGCTTGCTTGCTTCTCTCAGCTCCAGCGGAA
CTCTGTTTCTGCTTCTATATTACAGCGTTTCGGGAGTGGGGGAGGGAGTTGGGGAGATAC
CAAGACAGGAAGCAAGGGTGTTGTTTTTCAGAAGTTTGGAGACTGATGAGAGAGACAGAC
TCATGACTGATACTAATCATTTTTCCTTCTATTTGTATCATTTTTAATAGTTGACAGTGC
ACTTACTCCTCACAAAAGCCCTGTGAAGTTGACATTACTAACTCCATTTTAAGGATGCTG
CTATTAAAAGCTGGAATGTGCTATGAAGGAGCTACTCTCTAAGGAATGGTGTGCTCCAGA
CTGAAAATTCCTCAAGTGACATGAATGAGATTAAGTAAGACCCTCGCTCAGGGACTGCCT
CATTGGTCTCAGTGTGGACAGCCAGCTGACTCAAGTGGAGCCTTTCCGGGAATGTACAAC
AGGACTGAGGGACTGAGCTTCAGTCCAGTTACTCACTTGAGTGGAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               409-512, - strand, RNAz p=0.736127

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               409-512, - strand, RNAz p=0.736127

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               93-329, gnl|bosTau2|chr9 (64102124-64102354)
               

               
               93-329, gnl|Hg17|chr1 (117389987-117390280)
               


               
               409-529, gnl|bosTau2|chr9 (64124489-64124605)
               

               
               409-529, gnl|canFam2|chr17 (57611028-57611663)
               

               
               409-529, gnl|dasNov1|scaffold_10524 (35517-34873)
               

               
               409-529, gnl|echTel1|scaffold_301438 (79532-80192)
               

               
               409-529, gnl|hg17|chr1 (117404517-117405145)
               

               
               409-529, gnl|Hg17|chr1 (117404824-117404945)
               

               
               409-529, gnl|loxAfr1|scaffold_666 (124193-123524)
               

               
               409-529, gnl|oryCun1|scaffold_207207 (42089-42733)
               

               
               409-529, gnl|panTro1|chr1 (117246860-117247486)
               

               
               409-529, gnl|rheMac2|chr1 (120123601-120124243)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-329, gnl|bosTau2|chr9 (64102124-64102354)
               

               
               93-329, gnl|Hg17|chr1 (117389987-117390280)
               


               
               409-529, gnl|bosTau2|chr9 (64124489-64124605)
               

               
               409-529, gnl|canFam2|chr17 (57611028-57611663)
               

               
               409-529, gnl|dasNov1|scaffold_10524 (35517-34873)
               

               
               409-529, gnl|echTel1|scaffold_301438 (79532-80192)
               

               
               409-529, gnl|hg17|chr1 (117404517-117405145)
               

               
               409-529, gnl|Hg17|chr1 (117404824-117404945)
               

               
               409-529, gnl|loxAfr1|scaffold_666 (124193-123524)
               

               
               409-529, gnl|oryCun1|scaffold_207207 (42089-42733)
               

               
               409-529, gnl|panTro1|chr1 (117246860-117247486)
               

               
               409-529, gnl|rheMac2|chr1 (120123601-120124243)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	93-329, gnl\|bosTau2\|chr9 (64102124-64102354)
	93-329, gnl\|Hg17\|chr1 (117389987-117390280)

	409-529, gnl\|bosTau2\|chr9 (64124489-64124605)
	409-529, gnl\|canFam2\|chr17 (57611028-57611663)
	409-529, gnl\|dasNov1\|scaffold_10524 (35517-34873)
	409-529, gnl\|echTel1\|scaffold_301438 (79532-80192)
	409-529, gnl\|hg17\|chr1 (117404517-117405145)
	409-529, gnl\|Hg17\|chr1 (117404824-117404945)
	409-529, gnl\|loxAfr1\|scaffold_666 (124193-123524)
	409-529, gnl\|oryCun1\|scaffold_207207 (42089-42733)
	409-529, gnl\|panTro1\|chr1 (117246860-117247486)
	409-529, gnl\|rheMac2\|chr1 (120123601-120124243)