Non-Coding RNA Search

rcte10_m5.y1

Sequence:


               
               GTGAGGGGGAGCTGACAGAGACTGCTGTTTCAACAAGACCCCCACTGCTGGCAAGACCTG
GGAAATGTAAGATGATGGTGAAATCCCGTAGATGTAAGAGTTCAGCTTGCCATCTGAAGG
ATTTACCACAGAGACAGAAAACAAAGAAGTTATGCCAGAAAAAAACAAGGGAGACAAGTC
AGCAGCATACGCCAATGCTCTGGTTGAAGACGTTGATTGAATCCATGCCTTTCCATGTCA
CATTTTCTTTCATGGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGGGGGAGCTGACAGAGACTGCTGTTTCAACAAGACCCCCACTGCTGGCAAGACCTG
GGAAATGTAAGATGATGGTGAAATCCCGTAGATGTAAGAGTTCAGCTTGCCATCTGAAGG
ATTTACCACAGAGACAGAAAACAAAGAAGTTATGCCAGAAAAAAACAAGGGAGACAAGTC
AGCAGCATACGCCAATGCTCTGGTTGAAGACGTTGATTGAATCCATGCCTTTCCATGTCA
CATTTTCTTTCATGGCCAA

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               3-178, gnl|bosTau2|chr2 (63769878-63770053)
               

               
               3-178, gnl|canFam2|chr37 (26753992-26754551)
               

               
               3-178, gnl|echTel1|scaffold_270672 (769-203)
               

               
               3-178, gnl|hg17|chr2 (217560709-217561289)
               

               
               3-178, gnl|Hg17|chr2 (217561024-217561209)
               

               
               3-178, gnl|loxAfr1|scaffold_15455 (76670-77192)
               

               
               3-178, gnl|mm7|chr1 (73266221-73266755)
               

               
               3-178, gnl|Mm7|chr1 (73266495-73266675)
               

               
               3-178, gnl|monDom2|scaffold_39 (4146398-4145872)
               

               
               3-178, gnl|panTro1|chr13 (107716542-107717100)
               

               
               3-178, gnl|rheMac2|chr12 (80677957-80678506)
               

               
               3-178, gnl|rn3|chr9 (72552968-72553518)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-178, gnl|bosTau2|chr2 (63769878-63770053)
               

               
               3-178, gnl|canFam2|chr37 (26753992-26754551)
               

               
               3-178, gnl|echTel1|scaffold_270672 (769-203)
               

               
               3-178, gnl|hg17|chr2 (217560709-217561289)
               

               
               3-178, gnl|Hg17|chr2 (217561024-217561209)
               

               
               3-178, gnl|loxAfr1|scaffold_15455 (76670-77192)
               

               
               3-178, gnl|mm7|chr1 (73266221-73266755)
               

               
               3-178, gnl|Mm7|chr1 (73266495-73266675)
               

               
               3-178, gnl|monDom2|scaffold_39 (4146398-4145872)
               

               
               3-178, gnl|panTro1|chr13 (107716542-107717100)
               

               
               3-178, gnl|rheMac2|chr12 (80677957-80678506)
               

               
               3-178, gnl|rn3|chr9 (72552968-72553518)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	3-178, gnl\|bosTau2\|chr2 (63769878-63770053)
	3-178, gnl\|canFam2\|chr37 (26753992-26754551)
	3-178, gnl\|echTel1\|scaffold_270672 (769-203)
	3-178, gnl\|hg17\|chr2 (217560709-217561289)
	3-178, gnl\|Hg17\|chr2 (217561024-217561209)
	3-178, gnl\|loxAfr1\|scaffold_15455 (76670-77192)
	3-178, gnl\|mm7\|chr1 (73266221-73266755)
	3-178, gnl\|Mm7\|chr1 (73266495-73266675)
	3-178, gnl\|monDom2\|scaffold_39 (4146398-4145872)
	3-178, gnl\|panTro1\|chr13 (107716542-107717100)
	3-178, gnl\|rheMac2\|chr12 (80677957-80678506)
	3-178, gnl\|rn3\|chr9 (72552968-72553518)