Non-Coding RNA Search

rcte11_d15.y1

Sequence:


               
               GTTTTTTTTTTTTTTTTTTTTTTTAAAGTATATCAATTTTTATTTTTGCTTCTACTGTGC
CCTCTTGTGGAATGACATATAACTTACATATTCATTTTTATGAAGTTTTAACAAAGAGCA
GATTGTACCCATGTCATGGCTATATTCACGCATGTTCCCATCAATGAAATAGACTCTTCT
GATCAGTTTAACCTTTGATCTCCAGGCAAACAAGATTCAGATTGCCTCTGAGTTGGGCAA
ATCAATGATGGCTTTGTTCAGGATGGTTTTCTAAAATTCTGGCTCATCAAGCTTGTGTTT
CGTCTGTGATTTCATCATCTCAGCTGTGGGGCCAACTGTTAAAATTGCATGCAGGACATT
TTCCACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTTTTTTTTTTAAAGTATATCAATTTTTATTTTTGCTTCTACTGTGC
CCTCTTGTGGAATGACATATAACTTACATATTCATTTTTATGAAGTTTTAACAAAGAGCA
GATTGTACCCATGTCATGGCTATATTCACGCATGTTCCCATCAATGAAATAGACTCTTCT
GATCAGTTTAACCTTTGATCTCCAGGCAAACAAGATTCAGATTGCCTCTGAGTTGGGCAA
ATCAATGATGGCTTTGTTCAGGATGGTTTTCTAAAATTCTGGCTCATCAAGCTTGTGTTT
CGTCTGTGATTTCATCATCTCAGCTGTGGGGCCAACTGTTAAAATTGCATGCAGGACATT
TTCCACAGG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               152-369, gnl|bosTau2|chr22 (21010695-21010477)
               

               
               152-369, gnl|canFam2|chr20 (22222594-22222226)
               

               
               152-369, gnl|dasNov1|scaffold_25996 (41504-41134)
               

               
               152-369, gnl|hg17|chr3 (73070394-73070758)
               

               
               152-369, gnl|Hg17|chr3 (73070795-73070593)
               

               
               152-369, gnl|loxAfr1|scaffold_5066 (71356-70985)
               

               
               152-369, gnl|mm7|chr6 (100858053-100858397)
               

               
               152-369, gnl|Mm7|chr6 (100858439-100858235)
               

               
               152-369, gnl|panTro1|chr2 (75040992-75041355)
               

               
               152-369, gnl|rheMac2|chr2 (63281294-63280931)
               

               
               152-369, gnl|rn3|chr4 (135905765-135906109)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-369, gnl|bosTau2|chr22 (21010695-21010477)
               

               
               152-369, gnl|canFam2|chr20 (22222594-22222226)
               

               
               152-369, gnl|dasNov1|scaffold_25996 (41504-41134)
               

               
               152-369, gnl|hg17|chr3 (73070394-73070758)
               

               
               152-369, gnl|Hg17|chr3 (73070795-73070593)
               

               
               152-369, gnl|loxAfr1|scaffold_5066 (71356-70985)
               

               
               152-369, gnl|mm7|chr6 (100858053-100858397)
               

               
               152-369, gnl|Mm7|chr6 (100858439-100858235)
               

               
               152-369, gnl|panTro1|chr2 (75040992-75041355)
               

               
               152-369, gnl|rheMac2|chr2 (63281294-63280931)
               

               
               152-369, gnl|rn3|chr4 (135905765-135906109)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	152-369, gnl\|bosTau2\|chr22 (21010695-21010477)
	152-369, gnl\|canFam2\|chr20 (22222594-22222226)
	152-369, gnl\|dasNov1\|scaffold_25996 (41504-41134)
	152-369, gnl\|hg17\|chr3 (73070394-73070758)
	152-369, gnl\|Hg17\|chr3 (73070795-73070593)
	152-369, gnl\|loxAfr1\|scaffold_5066 (71356-70985)
	152-369, gnl\|mm7\|chr6 (100858053-100858397)
	152-369, gnl\|Mm7\|chr6 (100858439-100858235)
	152-369, gnl\|panTro1\|chr2 (75040992-75041355)
	152-369, gnl\|rheMac2\|chr2 (63281294-63280931)
	152-369, gnl\|rn3\|chr4 (135905765-135906109)