Non-Coding RNA Search

rcte14_j14.y1

Sequence:


               
               TGCTCCCTGACATCTTTGGGCAAATCCCAGAGCTGCCAACATCTGGAATGAATAAATCCA
CGGACCAAAAATCCACACCCTCCCCCCTTCTTGTAACCAGAAGGAAACCTCTTCACATTG
TCTGGGAATAGATTAGTTCTGAAATGTGATAACAGAGAGAGAGACCATTCTGTCCTAGTT
TGAGGCAGGGTCTTTTACTGTTTCTAATGAGAAAGGACTGCTAACCCATGTCTTTCTTTT
ATCTGTGTTCTCTTTAATCTGGAGCCCCAAGGCATCACTTTTGACTGCTCCCAGAAAAAT
TACAGCTTGGACCCGCCTCGCCCTGTTGAGGTTCTATTTAAAGACACGAATGGCGTTGGC
CAGATGCTGCTGGCCCTTTGGAAACTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCCCTGACATCTTTGGGCAAATCCCAGAGCTGCCAACATCTGGAATGAATAAATCCA
CGGACCAAAAATCCACACCCTCCCCCCTTCTTGTAACCAGAAGGAAACCTCTTCACATTG
TCTGGGAATAGATTAGTTCTGAAATGTGATAACAGAGAGAGAGACCATTCTGTCCTAGTT
TGAGGCAGGGTCTTTTACTGTTTCTAATGAGAAAGGACTGCTAACCCATGTCTTTCTTTT
ATCTGTGTTCTCTTTAATCTGGAGCCCCAAGGCATCACTTTTGACTGCTCCCAGAAAAAT
TACAGCTTGGACCCGCCTCGCCCTGTTGAGGTTCTATTTAAAGACACGAATGGCGTTGGC
CAGATGCTGCTGGCCCTTTGGAAACTTGTT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               4-390, gnl|bosTau2|chr4 (60052686-60053082)
               

               
               4-390, gnl|canFam2|chr16 (12746726-12746392)
               

               
               4-390, gnl|dasNov1|scaffold_12507 (40893-41214)
               

               
               4-390, gnl|hg17|chr7 (138033245-138033563)
               

               
               4-390, gnl|Hg17|chr7 (138033718-138033363)
               

               
               4-390, gnl|mm7|chr6 (38096037-38096335)
               

               
               4-390, gnl|Mm7|chr6 (38096485-38096153)
               

               
               4-390, gnl|monDom2|scaffold_22 (3638896-3638577)
               

               
               4-390, gnl|oryCun1|scaffold_157961 (5036-4768)
               

               
               4-390, gnl|panTro1|chr6_random (10866564-10866882)
               

               
               4-390, gnl|rheMac2|chr3 (176376183-176376504)
               

               
               4-390, gnl|rn3|chr4 (65986902-65987220)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-390, gnl|bosTau2|chr4 (60052686-60053082)
               

               
               4-390, gnl|canFam2|chr16 (12746726-12746392)
               

               
               4-390, gnl|dasNov1|scaffold_12507 (40893-41214)
               

               
               4-390, gnl|hg17|chr7 (138033245-138033563)
               

               
               4-390, gnl|Hg17|chr7 (138033718-138033363)
               

               
               4-390, gnl|mm7|chr6 (38096037-38096335)
               

               
               4-390, gnl|Mm7|chr6 (38096485-38096153)
               

               
               4-390, gnl|monDom2|scaffold_22 (3638896-3638577)
               

               
               4-390, gnl|oryCun1|scaffold_157961 (5036-4768)
               

               
               4-390, gnl|panTro1|chr6_random (10866564-10866882)
               

               
               4-390, gnl|rheMac2|chr3 (176376183-176376504)
               

               
               4-390, gnl|rn3|chr4 (65986902-65987220)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	4-390, gnl\|bosTau2\|chr4 (60052686-60053082)
	4-390, gnl\|canFam2\|chr16 (12746726-12746392)
	4-390, gnl\|dasNov1\|scaffold_12507 (40893-41214)
	4-390, gnl\|hg17\|chr7 (138033245-138033563)
	4-390, gnl\|Hg17\|chr7 (138033718-138033363)
	4-390, gnl\|mm7\|chr6 (38096037-38096335)
	4-390, gnl\|Mm7\|chr6 (38096485-38096153)
	4-390, gnl\|monDom2\|scaffold_22 (3638896-3638577)
	4-390, gnl\|oryCun1\|scaffold_157961 (5036-4768)
	4-390, gnl\|panTro1\|chr6_random (10866564-10866882)
	4-390, gnl\|rheMac2\|chr3 (176376183-176376504)
	4-390, gnl\|rn3\|chr4 (65986902-65987220)