Non-Coding RNA Search

rcte16_e4.y1

Sequence:


               
               GGAAAATACATGATGAAATACAATAAAAGTCAAGATGACAGCTCGATATCCACGCTGAGA
AGTCAAGTAACTGATGTTAAAAATGTCATGACTCAAAATATCGATAAAATTTTGGAAAGC
GAAGAAAGACTGAATATCTTCACTGCTAGAACAGACAATCTGCAAATAACTGTGAGTGTC
ACACAGCCGCCTGAACCCCAAACAGTGCTCTGAGCCACGGGATCATTGCCTTGAGACAAA
TTGCCAAAAGCAAAAACATACCAGGGATACTCAGTGAGATAAACCTCTCTCACCAAAATA
TGGCTTTATCAAAAATTACTGGAATGCAACTAAAATATTAAAAAGAATAATTATAAGACA
AAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAATACATGATGAAATACAATAAAAGTCAAGATGACAGCTCGATATCCACGCTGAGA
AGTCAAGTAACTGATGTTAAAAATGTCATGACTCAAAATATCGATAAAATTTTGGAAAGC
GAAGAAAGACTGAATATCTTCACTGCTAGAACAGACAATCTGCAAATAACTGTGAGTGTC
ACACAGCCGCCTGAACCCCAAACAGTGCTCTGAGCCACGGGATCATTGCCTTGAGACAAA
TTGCCAAAAGCAAAAACATACCAGGGATACTCAGTGAGATAAACCTCTCTCACCAAAATA
TGGCTTTATCAAAAATTACTGGAATGCAACTAAAATATTAAAAAGAATAATTATAAGACA
AAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57109080|ref|XP_535626.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57109080|ref|XP_535626.1|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               12-361, gnl|bosTau2|chr6 (54138705-54138356)
               

               
               12-361, gnl|canFam2|chr32 (9259404-9259784)
               

               
               12-361, gnl|echTel1|scaffold_291377 (37258-37631)
               

               
               12-361, gnl|hg17|chr4 (83598556-83598934)
               

               
               12-361, gnl|Hg17|chr4 (83598658-83598990)
               

               
               12-361, gnl|loxAfr1|scaffold_60117 (9274-9686)
               

               
               12-361, gnl|mm7|chr5 (99155927-99156277)
               

               
               12-361, gnl|oryCun1|scaffold_164238 (547-178)
               

               
               12-361, gnl|panTro1|chr3 (50110767-50110371)
               

               
               12-361, gnl|rheMac2|chr5 (47283367-47282970)
               

               
               12-361, gnl|rn3|chr14 (10958801-10958451)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-361, gnl|bosTau2|chr6 (54138705-54138356)
               

               
               12-361, gnl|canFam2|chr32 (9259404-9259784)
               

               
               12-361, gnl|echTel1|scaffold_291377 (37258-37631)
               

               
               12-361, gnl|hg17|chr4 (83598556-83598934)
               

               
               12-361, gnl|Hg17|chr4 (83598658-83598990)
               

               
               12-361, gnl|loxAfr1|scaffold_60117 (9274-9686)
               

               
               12-361, gnl|mm7|chr5 (99155927-99156277)
               

               
               12-361, gnl|oryCun1|scaffold_164238 (547-178)
               

               
               12-361, gnl|panTro1|chr3 (50110767-50110371)
               

               
               12-361, gnl|rheMac2|chr5 (47283367-47282970)
               

               
               12-361, gnl|rn3|chr14 (10958801-10958451)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	12-361, gnl\|bosTau2\|chr6 (54138705-54138356)
	12-361, gnl\|canFam2\|chr32 (9259404-9259784)
	12-361, gnl\|echTel1\|scaffold_291377 (37258-37631)
	12-361, gnl\|hg17\|chr4 (83598556-83598934)
	12-361, gnl\|Hg17\|chr4 (83598658-83598990)
	12-361, gnl\|loxAfr1\|scaffold_60117 (9274-9686)
	12-361, gnl\|mm7\|chr5 (99155927-99156277)
	12-361, gnl\|oryCun1\|scaffold_164238 (547-178)
	12-361, gnl\|panTro1\|chr3 (50110767-50110371)
	12-361, gnl\|rheMac2\|chr5 (47283367-47282970)
	12-361, gnl\|rn3\|chr14 (10958801-10958451)