Non-Coding RNA Search

rcte16_j16.y1

Sequence:


               
               CTGGAAGCAGCAGATTAGAAAGGCCTGAGGGACTGCTTCGGGAAGGCTCACTGACAGCAG
GAAAAAAGGGACAGGTTGCAGCCTGACTACAAGGGAGGCAAGAGAAAAAGTATAAAAAGC
AGGAACAAAATCTCAAAAGGCACAGCAGTCTGGGGCATTTACTAAGAGACAAAAAGCCCT
CC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAAGCAGCAGATTAGAAAGGCCTGAGGGACTGCTTCGGGAAGGCTCACTGACAGCAG
GAAAAAAGGGACAGGTTGCAGCCTGACTACAAGGGAGGCAAGAGAAAAAGTATAAAAAGC
AGGAACAAAATCTCAAAAGGCACAGCAGTCTGGGGCATTTACTAAGAGACAAAAAGCCCT
CC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-182, gnl|bosTau2|chr21 (16784278-16784097)
               

               
               1-182, gnl|canFam2|chr3 (58194167-58194370)
               

               
               1-182, gnl|dasNov1|scaffold_19619 (35425-35610)
               

               
               1-182, gnl|echTel1|scaffold_216442 (14256-14075)
               

               
               1-182, gnl|hg17|chr15 (82068992-82069179)
               

               
               1-182, gnl|Hg17|chr15 (82069037-82069218)
               

               
               1-182, gnl|loxAfr1|scaffold_647 (41958-42143)
               

               
               1-182, gnl|mm7|chr7 (78220529-78220710)
               

               
               1-182, gnl|Mm7|chr7 (78220575-78220773)
               

               
               1-182, gnl|oryCun1|scaffold_199291 (94904-95091)
               

               
               1-182, gnl|panTro1|chr16 (82870539-82870726)
               

               
               1-182, gnl|rheMac2|chr7 (62905097-62904910)
               

               
               1-182, gnl|rn3|chr1 (138597815-138597995)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr21 (16784278-16784097)
               

               
               1-182, gnl|canFam2|chr3 (58194167-58194370)
               

               
               1-182, gnl|dasNov1|scaffold_19619 (35425-35610)
               

               
               1-182, gnl|echTel1|scaffold_216442 (14256-14075)
               

               
               1-182, gnl|hg17|chr15 (82068992-82069179)
               

               
               1-182, gnl|Hg17|chr15 (82069037-82069218)
               

               
               1-182, gnl|loxAfr1|scaffold_647 (41958-42143)
               

               
               1-182, gnl|mm7|chr7 (78220529-78220710)
               

               
               1-182, gnl|Mm7|chr7 (78220575-78220773)
               

               
               1-182, gnl|oryCun1|scaffold_199291 (94904-95091)
               

               
               1-182, gnl|panTro1|chr16 (82870539-82870726)
               

               
               1-182, gnl|rheMac2|chr7 (62905097-62904910)
               

               
               1-182, gnl|rn3|chr1 (138597815-138597995)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-182, gnl\|bosTau2\|chr21 (16784278-16784097)
	1-182, gnl\|canFam2\|chr3 (58194167-58194370)
	1-182, gnl\|dasNov1\|scaffold_19619 (35425-35610)
	1-182, gnl\|echTel1\|scaffold_216442 (14256-14075)
	1-182, gnl\|hg17\|chr15 (82068992-82069179)
	1-182, gnl\|Hg17\|chr15 (82069037-82069218)
	1-182, gnl\|loxAfr1\|scaffold_647 (41958-42143)
	1-182, gnl\|mm7\|chr7 (78220529-78220710)
	1-182, gnl\|Mm7\|chr7 (78220575-78220773)
	1-182, gnl\|oryCun1\|scaffold_199291 (94904-95091)
	1-182, gnl\|panTro1\|chr16 (82870539-82870726)
	1-182, gnl\|rheMac2\|chr7 (62905097-62904910)
	1-182, gnl\|rn3\|chr1 (138597815-138597995)