Non-Coding RNA Search

rcte16_l15.y1

Sequence:


               
               AGAAGTCTTCTGCTGTGAAACTTGCCATGAGCTCAAAAGCTTCTGGGAGAAAGAAATTAG
AAAACAGACTTGTTACCGGGAACTGGAAGAAGATCGACAGGGAAGGAGTGCCCTGGGAAA
GAGCATGGATGCAACCAGTTTCTCAAACTAAGTGAAGTCAAAAAGAGAAATACTATATGA
TATTGCTTATATGTGAAATCTAAAACATGGCACAAATGAACCTACCTACAAAACGGAAAC
AGACTCAGATATGTTTCTTGACTCTTTATTCTCTTCCATTACTATCTTGATATTAAGACT
TAAAATCATGTAGTGTGAGTCATCCAACTCTCTTCTACTTTAAAATTGTTTTGGCTAATC
TATTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCTTCTGCTGTGAAACTTGCCATGAGCTCAAAAGCTTCTGGGAGAAAGAAATTAG
AAAACAGACTTGTTACCGGGAACTGGAAGAAGATCGACAGGGAAGGAGTGCCCTGGGAAA
GAGCATGGATGCAACCAGTTTCTCAAACTAAGTGAAGTCAAAAAGAGAAATACTATATGA
TATTGCTTATATGTGAAATCTAAAACATGGCACAAATGAACCTACCTACAAAACGGAAAC
AGACTCAGATATGTTTCTTGACTCTTTATTCTCTTCCATTACTATCTTGATATTAAGACT
TAAAATCATGTAGTGTGAGTCATCCAACTCTCTTCTACTTTAAAATTGTTTTGGCTAATC
TATTTCTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-121, gnl|bosTau2|chr8 (47035165-47035285)
               

               
               1-121, gnl|canFam2|chr5 (77048921-77049089)
               

               
               1-121, gnl|dasNov1|scaffold_5187 (35999-36175)
               

               
               1-121, gnl|echTel1|scaffold_7599 (1359-1514)
               

               
               1-121, gnl|hg17|chr9 (38693851-38694027)
               

               
               1-121, gnl|Hg17|chr9 (38693973-38693853)
               

               
               1-121, gnl|loxAfr1|scaffold_20108 (14994-15171)
               

               
               1-121, gnl|mm7|chr13 (62317092-62317268)
               

               
               1-121, gnl|Mm7|chr13 (62317214-62317094)
               

               
               1-121, gnl|monDom2|scaffold_19 (956734-956905)
               

               
               1-121, gnl|oryCun1|scaffold_158100 (4051-4227)
               

               
               1-121, gnl|panTro1|chr11 (39418909-39419085)
               

               
               1-121, gnl|rheMac2|chr15 (108894490-108894666)
               

               
               1-121, gnl|rn3|chr17 (6160617-6160441)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-121, gnl|bosTau2|chr8 (47035165-47035285)
               

               
               1-121, gnl|canFam2|chr5 (77048921-77049089)
               

               
               1-121, gnl|dasNov1|scaffold_5187 (35999-36175)
               

               
               1-121, gnl|echTel1|scaffold_7599 (1359-1514)
               

               
               1-121, gnl|hg17|chr9 (38693851-38694027)
               

               
               1-121, gnl|Hg17|chr9 (38693973-38693853)
               

               
               1-121, gnl|loxAfr1|scaffold_20108 (14994-15171)
               

               
               1-121, gnl|mm7|chr13 (62317092-62317268)
               

               
               1-121, gnl|Mm7|chr13 (62317214-62317094)
               

               
               1-121, gnl|monDom2|scaffold_19 (956734-956905)
               

               
               1-121, gnl|oryCun1|scaffold_158100 (4051-4227)
               

               
               1-121, gnl|panTro1|chr11 (39418909-39419085)
               

               
               1-121, gnl|rheMac2|chr15 (108894490-108894666)
               

               
               1-121, gnl|rn3|chr17 (6160617-6160441)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-121, gnl\|bosTau2\|chr8 (47035165-47035285)
	1-121, gnl\|canFam2\|chr5 (77048921-77049089)
	1-121, gnl\|dasNov1\|scaffold_5187 (35999-36175)
	1-121, gnl\|echTel1\|scaffold_7599 (1359-1514)
	1-121, gnl\|hg17\|chr9 (38693851-38694027)
	1-121, gnl\|Hg17\|chr9 (38693973-38693853)
	1-121, gnl\|loxAfr1\|scaffold_20108 (14994-15171)
	1-121, gnl\|mm7\|chr13 (62317092-62317268)
	1-121, gnl\|Mm7\|chr13 (62317214-62317094)
	1-121, gnl\|monDom2\|scaffold_19 (956734-956905)
	1-121, gnl\|oryCun1\|scaffold_158100 (4051-4227)
	1-121, gnl\|panTro1\|chr11 (39418909-39419085)
	1-121, gnl\|rheMac2\|chr15 (108894490-108894666)
	1-121, gnl\|rn3\|chr17 (6160617-6160441)