Non-Coding RNA Search

rcte16_p17.y1

Sequence:


               
               AAAAGCTCTATTATCCAACTAACTTCTCCATAATTATTGTTATAATATTATTACTGTTTA
TAAAATATGTTAAAATAACTAGTTTGCAGAAGTCAGCAGGTAAGATAAGTTATTAAGTTG
ATTCTCTTTGGGTTCTATTGTATAGGCAAAAGGAATAAAAATTTCAAACGTCAAAAAAAA
AAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCTCTATTATCCAACTAACTTCTCCATAATTATTGTTATAATATTATTACTGTTTA
TAAAATATGTTAAAATAACTAGTTTGCAGAAGTCAGCAGGTAAGATAAGTTATTAAGTTG
ATTCTCTTTGGGTTCTATTGTATAGGCAAAAGGAATAAAAATTTCAAACGTCAAAAAAAA
AAAAAAAAAAAAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-172, gnl|bosTau2|chr29 (44406344-44406171)
               

               
               1-172, gnl|canFam2|chr18 (52257304-52257067)
               

               
               1-172, gnl|hg17|chr11 (68231452-68231688)
               

               
               1-172, gnl|Hg17|chr11 (68231659-68231489)
               

               
               1-172, gnl|loxAfr1|scaffold_17932 (10160-10394)
               

               
               1-172, gnl|mm7|chr19 (3302616-3302412)
               

               
               1-172, gnl|monDom2|scaffold_182 (10235-10417)
               

               
               1-172, gnl|panTro1|chr9 (69284573-69284809)
               

               
               1-172, gnl|rheMac2|chr14 (6025643-6025407)
               

               
               1-172, gnl|rn3|chr1 (206087786-206087575)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr29 (44406344-44406171)
               

               
               1-172, gnl|canFam2|chr18 (52257304-52257067)
               

               
               1-172, gnl|hg17|chr11 (68231452-68231688)
               

               
               1-172, gnl|Hg17|chr11 (68231659-68231489)
               

               
               1-172, gnl|loxAfr1|scaffold_17932 (10160-10394)
               

               
               1-172, gnl|mm7|chr19 (3302616-3302412)
               

               
               1-172, gnl|monDom2|scaffold_182 (10235-10417)
               

               
               1-172, gnl|panTro1|chr9 (69284573-69284809)
               

               
               1-172, gnl|rheMac2|chr14 (6025643-6025407)
               

               
               1-172, gnl|rn3|chr1 (206087786-206087575)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-172, gnl\|bosTau2\|chr29 (44406344-44406171)
	1-172, gnl\|canFam2\|chr18 (52257304-52257067)
	1-172, gnl\|hg17\|chr11 (68231452-68231688)
	1-172, gnl\|Hg17\|chr11 (68231659-68231489)
	1-172, gnl\|loxAfr1\|scaffold_17932 (10160-10394)
	1-172, gnl\|mm7\|chr19 (3302616-3302412)
	1-172, gnl\|monDom2\|scaffold_182 (10235-10417)
	1-172, gnl\|panTro1\|chr9 (69284573-69284809)
	1-172, gnl\|rheMac2\|chr14 (6025643-6025407)
	1-172, gnl\|rn3\|chr1 (206087786-206087575)