Non-Coding RNA Search

rcte19_o1.y1

Sequence:


               
               GGAGCCTGTGGCTAACACAGAGTCTTCAGATCAAAAATGTGCTCCTAAGCCATTATCTCA
ACAGTGTGACACAGTTACAGGTGGTGTTTATGAAGATTCTTGTGCTAGTCATGGTCCAAT
GAGTTTGGAAGAATTGGAGTTACAGCCACATCCTCATGTTGCTCTTCCCACAACGCTACT
GACAACACAAGAAAATGATGTTAAATTATCAGTAGCAGCTACAGATTTTCCTCAGTACCA
ACAAAAGGAAGATCAAGATGTTAAGCAAGTTGAACACAAGCCTGTTCAAAGTCGTTTAAT
ACATGTAAGAAGTAAATCTGACATTTCACTTCAGCCACAACAAGGTGGGAAAGCAGTACC
GCTCTTCACTCCTCAGATGTCACCTCCCAGGATGTCTCTGACTGTCCCCTCAGTGAACCT
GGAGGACGGCGCTCAGTCTCTGAGCATCAACACCATCCAGGGGGACACAGAGTCCTCAGG
AGCAGATACCTTCTGAATGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCTGTGGCTAACACAGAGTCTTCAGATCAAAAATGTGCTCCTAAGCCATTATCTCA
ACAGTGTGACACAGTTACAGGTGGTGTTTATGAAGATTCTTGTGCTAGTCATGGTCCAAT
GAGTTTGGAAGAATTGGAGTTACAGCCACATCCTCATGTTGCTCTTCCCACAACGCTACT
GACAACACAAGAAAATGATGTTAAATTATCAGTAGCAGCTACAGATTTTCCTCAGTACCA
ACAAAAGGAAGATCAAGATGTTAAGCAAGTTGAACACAAGCCTGTTCAAAGTCGTTTAAT
ACATGTAAGAAGTAAATCTGACATTTCACTTCAGCCACAACAAGGTGGGAAAGCAGTACC
GCTCTTCACTCCTCAGATGTCACCTCCCAGGATGTCTCTGACTGTCCCCTCAGTGAACCT
GGAGGACGGCGCTCAGTCTCTGAGCATCAACACCATCCAGGGGGACACAGAGTCCTCAGG
AGCAGATACCTTCTGAATGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12654165|gb|AAH00900.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12654165|gb|AAH00900.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               343-503, gnl|bosTau2|chr10 (47789863-47789703)
               

               
               343-503, gnl|canFam2|chr8 (36910553-36910931)
               

               
               343-503, gnl|dasNov1|scaffold_55195 (3808-4187)
               

               
               343-503, gnl|echTel1|scaffold_318599 (45647-45255)
               

               
               343-503, gnl|galGal2|chr5 (51887867-51887476)
               

               
               343-503, gnl|hg17|chr14 (58084241-58084616)
               

               
               343-503, gnl|Hg17|chr14 (58084250-58084410)
               

               
               343-503, gnl|mm7|chr12 (69186772-69187155)
               

               
               343-503, gnl|Mm7|chr12 (69186781-69186941)
               

               
               343-503, gnl|monDom2|scaffold_8 (70627300-70627691)
               

               
               343-503, gnl|panTro1|chr15 (57642043-57642418)
               

               
               343-503, gnl|rheMac2|chr7 (121551965-121552341)
               

               
               343-503, gnl|rn3|chr6 (93340723-93341081)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               343-503, gnl|bosTau2|chr10 (47789863-47789703)
               

               
               343-503, gnl|canFam2|chr8 (36910553-36910931)
               

               
               343-503, gnl|dasNov1|scaffold_55195 (3808-4187)
               

               
               343-503, gnl|echTel1|scaffold_318599 (45647-45255)
               

               
               343-503, gnl|galGal2|chr5 (51887867-51887476)
               

               
               343-503, gnl|hg17|chr14 (58084241-58084616)
               

               
               343-503, gnl|Hg17|chr14 (58084250-58084410)
               

               
               343-503, gnl|mm7|chr12 (69186772-69187155)
               

               
               343-503, gnl|Mm7|chr12 (69186781-69186941)
               

               
               343-503, gnl|monDom2|scaffold_8 (70627300-70627691)
               

               
               343-503, gnl|panTro1|chr15 (57642043-57642418)
               

               
               343-503, gnl|rheMac2|chr7 (121551965-121552341)
               

               
               343-503, gnl|rn3|chr6 (93340723-93341081)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	343-503, gnl\|bosTau2\|chr10 (47789863-47789703)
	343-503, gnl\|canFam2\|chr8 (36910553-36910931)
	343-503, gnl\|dasNov1\|scaffold_55195 (3808-4187)
	343-503, gnl\|echTel1\|scaffold_318599 (45647-45255)
	343-503, gnl\|galGal2\|chr5 (51887867-51887476)
	343-503, gnl\|hg17\|chr14 (58084241-58084616)
	343-503, gnl\|Hg17\|chr14 (58084250-58084410)
	343-503, gnl\|mm7\|chr12 (69186772-69187155)
	343-503, gnl\|Mm7\|chr12 (69186781-69186941)
	343-503, gnl\|monDom2\|scaffold_8 (70627300-70627691)
	343-503, gnl\|panTro1\|chr15 (57642043-57642418)
	343-503, gnl\|rheMac2\|chr7 (121551965-121552341)
	343-503, gnl\|rn3\|chr6 (93340723-93341081)