Non-Coding RNA Search

rcte21_d9.y1

Sequence:


               
               AAGATTGGACATGGATGAAGAGATTAAGCCCCAAATGAGCAAGGATTTGGTGCTGCTTCC
AGGAGAGGTGGAGCAGGATGTGAGCACAAGTGTTCCTTCTTACGTTCCTTCTTACATTCC
TTCCGCGGCCCAGCCTCTCACCCCTGGAATGAAGCCAAGGCCCACCGGAAAGGGAGCAGA
GCAACAAAGGGAAGAGACAATCGGAGATGAAGTTCAGCCCTTCTCACTCGATGAAGACTT
TGATTATGAGGCTGTGATGCTCACCCCCAAGTTCACTCCTGCAGAGATAGATGCCATCAA
GGAGCTATGCAACCAAAGAGAAAGAGCACCCACACAGACGTAGAAGAACCCGGCGACTGA
TCCACAAAGACATCTTCGTGTTTGTTGTTATTTTGTTCTTACTGAAGCAACATCATCAGC
ATAAAGAATAAACCTACCATAAGCCCCAAAAAAAAAAAACTCGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATTGGACATGGATGAAGAGATTAAGCCCCAAATGAGCAAGGATTTGGTGCTGCTTCC
AGGAGAGGTGGAGCAGGATGTGAGCACAAGTGTTCCTTCTTACGTTCCTTCTTACATTCC
TTCCGCGGCCCAGCCTCTCACCCCTGGAATGAAGCCAAGGCCCACCGGAAAGGGAGCAGA
GCAACAAAGGGAAGAGACAATCGGAGATGAAGTTCAGCCCTTCTCACTCGATGAAGACTT
TGATTATGAGGCTGTGATGCTCACCCCCAAGTTCACTCCTGCAGAGATAGATGCCATCAA
GGAGCTATGCAACCAAAGAGAAAGAGCACCCACACAGACGTAGAAGAACCCGGCGACTGA
TCCACAAAGACATCTTCGTGTTTGTTGTTATTTTGTTCTTACTGAAGCAACATCATCAGC
ATAAAGAATAAACCTACCATAAGCCCCAAAAAAAAAAAACTCGTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96DD6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96DD6_HUMAN

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               203-447, gnl|bosTau2|chr15 (41089699-41089463)
               

               
               203-447, gnl|canFam2|chr18 (34576333-34576138)
               

               
               203-447, gnl|dasNov1|scaffold_5262 (92589-92394)
               

               
               203-447, gnl|echTel1|scaffold_314657 (125589-125784)
               

               
               203-447, gnl|galGal2|chr5 (16650950-16651164)
               

               
               203-447, gnl|hg17|chr11 (36637144-36637349)
               

               
               203-447, gnl|Hg17|chr11 (36637151-36637403)
               

               
               203-447, gnl|loxAfr1|scaffold_46601 (30650-30845)
               

               
               203-447, gnl|mm7|chr2 (101413073-101412888)
               

               
               203-447, gnl|Mm7|chr2 (101413064-101412834)
               

               
               203-447, gnl|monDom2|scaffold_33 (1780284-1780479)
               

               
               203-447, gnl|oryCun1|scaffold_141457 (4062-4240)
               

               
               203-447, gnl|panTro1|chr9 (37061252-37061457)
               

               
               203-447, gnl|rheMac2|chr14 (35190866-35190660)
               

               
               203-447, gnl|rn3|chr3 (86556125-86555931)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-447, gnl|bosTau2|chr15 (41089699-41089463)
               

               
               203-447, gnl|canFam2|chr18 (34576333-34576138)
               

               
               203-447, gnl|dasNov1|scaffold_5262 (92589-92394)
               

               
               203-447, gnl|echTel1|scaffold_314657 (125589-125784)
               

               
               203-447, gnl|galGal2|chr5 (16650950-16651164)
               

               
               203-447, gnl|hg17|chr11 (36637144-36637349)
               

               
               203-447, gnl|Hg17|chr11 (36637151-36637403)
               

               
               203-447, gnl|loxAfr1|scaffold_46601 (30650-30845)
               

               
               203-447, gnl|mm7|chr2 (101413073-101412888)
               

               
               203-447, gnl|Mm7|chr2 (101413064-101412834)
               

               
               203-447, gnl|monDom2|scaffold_33 (1780284-1780479)
               

               
               203-447, gnl|oryCun1|scaffold_141457 (4062-4240)
               

               
               203-447, gnl|panTro1|chr9 (37061252-37061457)
               

               
               203-447, gnl|rheMac2|chr14 (35190866-35190660)
               

               
               203-447, gnl|rn3|chr3 (86556125-86555931)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	203-447, gnl\|bosTau2\|chr15 (41089699-41089463)
	203-447, gnl\|canFam2\|chr18 (34576333-34576138)
	203-447, gnl\|dasNov1\|scaffold_5262 (92589-92394)
	203-447, gnl\|echTel1\|scaffold_314657 (125589-125784)
	203-447, gnl\|galGal2\|chr5 (16650950-16651164)
	203-447, gnl\|hg17\|chr11 (36637144-36637349)
	203-447, gnl\|Hg17\|chr11 (36637151-36637403)
	203-447, gnl\|loxAfr1\|scaffold_46601 (30650-30845)
	203-447, gnl\|mm7\|chr2 (101413073-101412888)
	203-447, gnl\|Mm7\|chr2 (101413064-101412834)
	203-447, gnl\|monDom2\|scaffold_33 (1780284-1780479)
	203-447, gnl\|oryCun1\|scaffold_141457 (4062-4240)
	203-447, gnl\|panTro1\|chr9 (37061252-37061457)
	203-447, gnl\|rheMac2\|chr14 (35190866-35190660)
	203-447, gnl\|rn3\|chr3 (86556125-86555931)