Non-Coding RNA Search

rcte23_i18.y1

Sequence:


               
               CATCGCCAAGATTGACATCACCGCAAATGACGTTCAACTGATGCAACCAGACCGGTATCC
CTTCTTCAGGCTCTTTCCCACCAAGCTCTCAACAGGCTGTACCTTATAAGGGCGAACATA
CCCTGAAGGGCTTTTCTGACTTCCTGGAAAGTCAAATCAACATCAGGATTGAGGATGAAG
ATGAGCTACTGTCTGCTGAGCAAAGCGAAGCAACAGAAGAGAAGGTCTTGACTGAGGGAA
AGGAGGTACCTTTTATAAAGAAAGAGCTACTGGAACAGAAGTTGCCAGAGCTGGAGAATG
TGACCAGGCTGGAAGAACCAGCTAGGCAGAAAGAAATGGCAGAGGAGGAGGAGAAGGTGG
CTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCGCCAAGATTGACATCACCGCAAATGACGTTCAACTGATGCAACCAGACCGGTATCC
CTTCTTCAGGCTCTTTCCCACCAAGCTCTCAACAGGCTGTACCTTATAAGGGCGAACATA
CCCTGAAGGGCTTTTCTGACTTCCTGGAAAGTCAAATCAACATCAGGATTGAGGATGAAG
ATGAGCTACTGTCTGCTGAGCAAAGCGAAGCAACAGAAGAGAAGGTCTTGACTGAGGGAA
AGGAGGTACCTTTTATAAAGAAAGAGCTACTGGAACAGAAGTTGCCAGAGCTGGAGAATG
TGACCAGGCTGGAAGAACCAGCTAGGCAGAAAGAAATGGCAGAGGAGGAGGAGAAGGTGG
CTGAGCC

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               184-367, gnl|bosTau2|chr25 (15866549-15866369)
               

               
               184-367, gnl|canFam2|chr6 (28013895-28013222)
               

               
               184-367, gnl|dasNov1|scaffold_247569 (663-9)
               

               
               184-367, gnl|hg17|chr16 (20277646-20278370)
               

               
               184-367, gnl|Hg17|chr16 (20278392-20278194)
               

               
               184-367, gnl|loxAfr1|scaffold_12784 (46053-45348)
               

               
               184-367, gnl|mm7|chr7 (115408529-115409249)
               

               
               184-367, gnl|Mm7|chr7 (115409271-115409052)
               

               
               184-367, gnl|oryCun1|scaffold_179406 (390-901)
               

               
               184-367, gnl|panTro1|chr18 (20745262-20745986)
               

               
               184-367, gnl|rheMac2|chr20 (19354852-19355572)
               

               
               184-367, gnl|rn3|chr1 (177889263-177889987)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-367, gnl|bosTau2|chr25 (15866549-15866369)
               

               
               184-367, gnl|canFam2|chr6 (28013895-28013222)
               

               
               184-367, gnl|dasNov1|scaffold_247569 (663-9)
               

               
               184-367, gnl|hg17|chr16 (20277646-20278370)
               

               
               184-367, gnl|Hg17|chr16 (20278392-20278194)
               

               
               184-367, gnl|loxAfr1|scaffold_12784 (46053-45348)
               

               
               184-367, gnl|mm7|chr7 (115408529-115409249)
               

               
               184-367, gnl|Mm7|chr7 (115409271-115409052)
               

               
               184-367, gnl|oryCun1|scaffold_179406 (390-901)
               

               
               184-367, gnl|panTro1|chr18 (20745262-20745986)
               

               
               184-367, gnl|rheMac2|chr20 (19354852-19355572)
               

               
               184-367, gnl|rn3|chr1 (177889263-177889987)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	184-367, gnl\|bosTau2\|chr25 (15866549-15866369)
	184-367, gnl\|canFam2\|chr6 (28013895-28013222)
	184-367, gnl\|dasNov1\|scaffold_247569 (663-9)
	184-367, gnl\|hg17\|chr16 (20277646-20278370)
	184-367, gnl\|Hg17\|chr16 (20278392-20278194)
	184-367, gnl\|loxAfr1\|scaffold_12784 (46053-45348)
	184-367, gnl\|mm7\|chr7 (115408529-115409249)
	184-367, gnl\|Mm7\|chr7 (115409271-115409052)
	184-367, gnl\|oryCun1\|scaffold_179406 (390-901)
	184-367, gnl\|panTro1\|chr18 (20745262-20745986)
	184-367, gnl\|rheMac2\|chr20 (19354852-19355572)
	184-367, gnl\|rn3\|chr1 (177889263-177889987)