Non-Coding RNA Search

rcte24_h21.y1

Sequence:


               
               GGAAAAATAAAAATCATTGAAACAATAACAATAAAAAATAAACTAAAGGGGCTGCTTCCC
CTCTCCTTGTGGGCATGGAATGTGGTAAAACTCACCACTGCAGCCTAGCTTTGGGGGAGC
GAGGCTCTATCTTAGCTGCCGGGGACCCTGGGGAAAGGAAGAGGAAAGAGAAGACGCCAA
CATTGACGCTGCCCAGTTCATGCCAGGCACTTGGCATAAGCTCGTTACAGCCTGAAGGGA
AAAAACAAAGCCTCTGTGAGTCTGTGTTTGGATAAAAGGAAGAGTGCCCATGATGAATGG
AAGAAATTTGAATCCTAAATAATTTATTTTTCCACAGGAGGATCTCAGCTGCTAAACCAC
CACCTCTGAGATTATAAAACTGGAAAAGCACCAGAATTCCAGGATCCTGGAGTATTGTCT
AAGCTCATGGCTCTGTCCTCTTTTTCTTTCCAGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAATAAAAATCATTGAAACAATAACAATAAAAAATAAACTAAAGGGGCTGCTTCCC
CTCTCCTTGTGGGCATGGAATGTGGTAAAACTCACCACTGCAGCCTAGCTTTGGGGGAGC
GAGGCTCTATCTTAGCTGCCGGGGACCCTGGGGAAAGGAAGAGGAAAGAGAAGACGCCAA
CATTGACGCTGCCCAGTTCATGCCAGGCACTTGGCATAAGCTCGTTACAGCCTGAAGGGA
AAAAACAAAGCCTCTGTGAGTCTGTGTTTGGATAAAAGGAAGAGTGCCCATGATGAATGG
AAGAAATTTGAATCCTAAATAATTTATTTTTCCACAGGAGGATCTCAGCTGCTAAACCAC
CACCTCTGAGATTATAAAACTGGAAAAGCACCAGAATTCCAGGATCCTGGAGTATTGTCT
AAGCTCATGGCTCTGTCCTCTTTTTCTTTCCAGATCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               341-457, + strand, RNAz p=0.64864

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-457, + strand, RNAz p=0.64864

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY032925, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY032925, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               39-457, gnl|bosTau2|chr2 (73121020-73120617)
               

               
               39-457, gnl|Hg17|chr2 (231697065-231697445)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-457, gnl|bosTau2|chr2 (73121020-73120617)
               

               
               39-457, gnl|Hg17|chr2 (231697065-231697445)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	39-457, gnl\|bosTau2\|chr2 (73121020-73120617)
	39-457, gnl\|Hg17\|chr2 (231697065-231697445)