Non-Coding RNA Search

rcte24_l9.y1

Sequence:


               
               GAAAAACTACGTGGGATTGTGGCACATAAAATGTCGAAACTTTCTCAGAAGCTTTAGTAA
TATAGTGTGTCATTATTGCAGGGACAGACAAACTAATCAATGGAACAGAATATAGAACTC
TTCAGGCAGACTCCCTAATATATGGAAATCTAATGACAGAGATGATACCACAGAGCCATG
AGGAAGGACTGGATCTTACAATTAACGGTGCTGGGAGAGTCTGGGAGAGTCATTCGTATG
GTTTGAAGCAACGCAAAGCAGGAGAAGTCAGCATAGGATGATAAAAATCCAAATGAAAAG
TTTAAAGTTGGATACAAGAGATTATGTATTGTCTACCCTAAGTACTGTGAAAGGTAATTA
ACTATTCAGGAAAAAACAGCAAACCAACAACAAACAAAAAGAAAACTAATTAGAAAATGA
AAAGATTTCCTAACTACAGGCTTCAGGAAACTGATTATGGAAAGAAAACATTATATTAAT
GGTAACAATATTCGTTTAACCAAGGTATCTTTTTAAAGTGATATTACTACAATTATAGCA
ATTAAACTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACTACGTGGGATTGTGGCACATAAAATGTCGAAACTTTCTCAGAAGCTTTAGTAA
TATAGTGTGTCATTATTGCAGGGACAGACAAACTAATCAATGGAACAGAATATAGAACTC
TTCAGGCAGACTCCCTAATATATGGAAATCTAATGACAGAGATGATACCACAGAGCCATG
AGGAAGGACTGGATCTTACAATTAACGGTGCTGGGAGAGTCTGGGAGAGTCATTCGTATG
GTTTGAAGCAACGCAAAGCAGGAGAAGTCAGCATAGGATGATAAAAATCCAAATGAAAAG
TTTAAAGTTGGATACAAGAGATTATGTATTGTCTACCCTAAGTACTGTGAAAGGTAATTA
ACTATTCAGGAAAAAACAGCAAACCAACAACAAACAAAAAGAAAACTAATTAGAAAATGA
AAAGATTTCCTAACTACAGGCTTCAGGAAACTGATTATGGAAAGAAAACATTATATTAAT
GGTAACAATATTCGTTTAACCAAGGTATCTTTTTAAAGTGATATTACTACAATTATAGCA
ATTAAACTAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-221, gnl|bosTau2|chr5 (36449544-36449320)
               

               
               1-221, gnl|canFam2|chr15 (40345729-40345939)
               

               
               1-221, gnl|hg17|chr12 (96683477-96683689)
               

               
               1-221, gnl|loxAfr1|scaffold_64409 (5552-5945)
               

               
               1-221, gnl|mm7|chr10 (91459109-91458900)
               

               
               1-221, gnl|panTro1|chr10 (99112136-99112349)
               

               
               1-221, gnl|rheMac2|chr11 (98976104-98976316)
               

               
               1-221, gnl|rn3|chr7 (28911213-28911003)
               


               
               242-548, gnl|bosTau2|chr5 (36444954-36444651)
               

               
               242-548, gnl|Hg17|chr12 (96679456-96679130)
               

               
               242-548, gnl|Mm7|chr10 (91463403-91463718)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr5 (36449544-36449320)
               

               
               1-221, gnl|canFam2|chr15 (40345729-40345939)
               

               
               1-221, gnl|hg17|chr12 (96683477-96683689)
               

               
               1-221, gnl|loxAfr1|scaffold_64409 (5552-5945)
               

               
               1-221, gnl|mm7|chr10 (91459109-91458900)
               

               
               1-221, gnl|panTro1|chr10 (99112136-99112349)
               

               
               1-221, gnl|rheMac2|chr11 (98976104-98976316)
               

               
               1-221, gnl|rn3|chr7 (28911213-28911003)
               


               
               242-548, gnl|bosTau2|chr5 (36444954-36444651)
               

               
               242-548, gnl|Hg17|chr12 (96679456-96679130)
               

               
               242-548, gnl|Mm7|chr10 (91463403-91463718)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-221, gnl\|bosTau2\|chr5 (36449544-36449320)
	1-221, gnl\|canFam2\|chr15 (40345729-40345939)
	1-221, gnl\|hg17\|chr12 (96683477-96683689)
	1-221, gnl\|loxAfr1\|scaffold_64409 (5552-5945)
	1-221, gnl\|mm7\|chr10 (91459109-91458900)
	1-221, gnl\|panTro1\|chr10 (99112136-99112349)
	1-221, gnl\|rheMac2\|chr11 (98976104-98976316)
	1-221, gnl\|rn3\|chr7 (28911213-28911003)

	242-548, gnl\|bosTau2\|chr5 (36444954-36444651)
	242-548, gnl\|Hg17\|chr12 (96679456-96679130)
	242-548, gnl\|Mm7\|chr10 (91463403-91463718)