Non-Coding RNA Search

rcte26_k13.y1

Sequence:


               
               TTCCTGTGCCTTAATGACTATGAAACAGTGTCTTGTCCTTCTATTCGCTGTCATTCTCTC
AAGCTACTACATATAACAGACAATAACCTCCAAGACTGGACTGAAATACGCAAGTTAGGA
GTTATGTTCCCTTCACTGGACACCCTCGTCCTGGCCAACAATCATTTGAATTCTATTGAG
GAGCCCAATGATTCATTGGCCAGATGGTTTCCTAATCTGCGATCCATCAGCCTCCACAAG
TCAGGTTTGCAGTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGTGCCTTAATGACTATGAAACAGTGTCTTGTCCTTCTATTCGCTGTCATTCTCTC
AAGCTACTACATATAACAGACAATAACCTCCAAGACTGGACTGAAATACGCAAGTTAGGA
GTTATGTTCCCTTCACTGGACACCCTCGTCCTGGCCAACAATCATTTGAATTCTATTGAG
GAGCCCAATGATTCATTGGCCAGATGGTTTCCTAATCTGCGATCCATCAGCCTCCACAAG
TCAGGTTTGCAGTCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-246, - strand, RNAz p=0.82493

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-246, - strand, RNAz p=0.82493

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-246, gnl|bosTau2|chr15 (16324755-16325000)
               

               
               1-246, gnl|canFam2|chr5 (16008918-16008645)
               

               
               1-246, gnl|danRer3|chr5 (69467077-69467354)
               

               
               1-246, gnl|echTel1|scaffold_202062 (5893-5620)
               

               
               1-246, gnl|fr1|chrUn (102692877-102693138)
               

               
               1-246, gnl|galGal2|chr24 (3467347-3467074)
               

               
               1-246, gnl|hg17|chr11 (120430960-120431233)
               

               
               1-246, gnl|Hg17|chr11 (120430984-120431229)
               

               
               1-246, gnl|mm7|chr9 (42377458-42377185)
               

               
               1-246, gnl|Mm7|chr9 (42377432-42377187)
               

               
               1-246, gnl|monDom2|scaffold_2 (116278898-116278625)
               

               
               1-246, gnl|oryCun1|scaffold_204568 (931-658)
               

               
               1-246, gnl|panTro1|chr9 (122477002-122477275)
               

               
               1-246, gnl|rheMac2|chr14 (119456419-119456692)
               

               
               1-246, gnl|rn3|chr8 (45439719-45439446)
               

               
               1-246, gnl|tetNig1|chr16 (8047121-8046848)
               

               
               1-246, gnl|xenTro1|scaffold_75 (2520528-2520802)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr15 (16324755-16325000)
               

               
               1-246, gnl|canFam2|chr5 (16008918-16008645)
               

               
               1-246, gnl|danRer3|chr5 (69467077-69467354)
               

               
               1-246, gnl|echTel1|scaffold_202062 (5893-5620)
               

               
               1-246, gnl|fr1|chrUn (102692877-102693138)
               

               
               1-246, gnl|galGal2|chr24 (3467347-3467074)
               

               
               1-246, gnl|hg17|chr11 (120430960-120431233)
               

               
               1-246, gnl|Hg17|chr11 (120430984-120431229)
               

               
               1-246, gnl|mm7|chr9 (42377458-42377185)
               

               
               1-246, gnl|Mm7|chr9 (42377432-42377187)
               

               
               1-246, gnl|monDom2|scaffold_2 (116278898-116278625)
               

               
               1-246, gnl|oryCun1|scaffold_204568 (931-658)
               

               
               1-246, gnl|panTro1|chr9 (122477002-122477275)
               

               
               1-246, gnl|rheMac2|chr14 (119456419-119456692)
               

               
               1-246, gnl|rn3|chr8 (45439719-45439446)
               

               
               1-246, gnl|tetNig1|chr16 (8047121-8046848)
               

               
               1-246, gnl|xenTro1|scaffold_75 (2520528-2520802)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-246, gnl\|bosTau2\|chr15 (16324755-16325000)
	1-246, gnl\|canFam2\|chr5 (16008918-16008645)
	1-246, gnl\|danRer3\|chr5 (69467077-69467354)
	1-246, gnl\|echTel1\|scaffold_202062 (5893-5620)
	1-246, gnl\|fr1\|chrUn (102692877-102693138)
	1-246, gnl\|galGal2\|chr24 (3467347-3467074)
	1-246, gnl\|hg17\|chr11 (120430960-120431233)
	1-246, gnl\|Hg17\|chr11 (120430984-120431229)
	1-246, gnl\|mm7\|chr9 (42377458-42377185)
	1-246, gnl\|Mm7\|chr9 (42377432-42377187)
	1-246, gnl\|monDom2\|scaffold_2 (116278898-116278625)
	1-246, gnl\|oryCun1\|scaffold_204568 (931-658)
	1-246, gnl\|panTro1\|chr9 (122477002-122477275)
	1-246, gnl\|rheMac2\|chr14 (119456419-119456692)
	1-246, gnl\|rn3\|chr8 (45439719-45439446)
	1-246, gnl\|tetNig1\|chr16 (8047121-8046848)
	1-246, gnl\|xenTro1\|scaffold_75 (2520528-2520802)