Non-Coding RNA Search

rcte26_k21.y1

Sequence:


               
               CCTGGAAAACCACATCAAAGCCAATCACCACCTCCCAAAACAAGGTCTATGAGGAATAGC
ACCACAGTAAAAAGGAGAAAGGGACCAAAGATAATGTTGAAAATTTTCCAGACAAAGTTT
CAGAATGAGAGAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAAAACCACATCAAAGCCAATCACCACCTCCCAAAACAAGGTCTATGAGGAATAGC
ACCACAGTAAAAAGGAGAAAGGGACCAAAGATAATGTTGAAAATTTTCCAGACAAAGTTT
CAGAATGAGAGAAATC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-136, gnl|bosTau2|chr1 (20782694-20782559)
               

               
               1-136, gnl|canFam2|chr33 (3283952-3284230)
               

               
               1-136, gnl|echTel1|scaffold_295453 (2579-2330)
               

               
               1-136, gnl|hg17|chr3 (88599099-88599385)
               

               
               1-136, gnl|Hg17|chr3 (88599283-88599408)
               

               
               1-136, gnl|loxAfr1|scaffold_17242 (4441-4696)
               

               
               1-136, gnl|mm7|chr16 (64426962-64426712)
               

               
               1-136, gnl|Mm7|chr16 (64426821-64426679)
               

               
               1-136, gnl|monDom2|scaffold_25 (11712602-11712795)
               

               
               1-136, gnl|panTro1|chr2 (90987018-90987303)
               

               
               1-136, gnl|rheMac2|chr2 (12702917-12703200)
               

               
               1-136, gnl|rn3|chr11 (1720742-1720495)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr1 (20782694-20782559)
               

               
               1-136, gnl|canFam2|chr33 (3283952-3284230)
               

               
               1-136, gnl|echTel1|scaffold_295453 (2579-2330)
               

               
               1-136, gnl|hg17|chr3 (88599099-88599385)
               

               
               1-136, gnl|Hg17|chr3 (88599283-88599408)
               

               
               1-136, gnl|loxAfr1|scaffold_17242 (4441-4696)
               

               
               1-136, gnl|mm7|chr16 (64426962-64426712)
               

               
               1-136, gnl|Mm7|chr16 (64426821-64426679)
               

               
               1-136, gnl|monDom2|scaffold_25 (11712602-11712795)
               

               
               1-136, gnl|panTro1|chr2 (90987018-90987303)
               

               
               1-136, gnl|rheMac2|chr2 (12702917-12703200)
               

               
               1-136, gnl|rn3|chr11 (1720742-1720495)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-136, gnl\|bosTau2\|chr1 (20782694-20782559)
	1-136, gnl\|canFam2\|chr33 (3283952-3284230)
	1-136, gnl\|echTel1\|scaffold_295453 (2579-2330)
	1-136, gnl\|hg17\|chr3 (88599099-88599385)
	1-136, gnl\|Hg17\|chr3 (88599283-88599408)
	1-136, gnl\|loxAfr1\|scaffold_17242 (4441-4696)
	1-136, gnl\|mm7\|chr16 (64426962-64426712)
	1-136, gnl\|Mm7\|chr16 (64426821-64426679)
	1-136, gnl\|monDom2\|scaffold_25 (11712602-11712795)
	1-136, gnl\|panTro1\|chr2 (90987018-90987303)
	1-136, gnl\|rheMac2\|chr2 (12702917-12703200)
	1-136, gnl\|rn3\|chr11 (1720742-1720495)