Non-Coding RNA Search

rcte29_d2.y1

Sequence:


               
               ATCTGTAAACAGAACCAATGAAATAATTAAAAAACTTAAAGCAGACAAACGTCTCCTGGA
GAAGATAAATGAAAAGCGTGAATCCAACTGCTTGGTGGAAAGAAGCAATCAAGTCAGCTT
ATGGAGAGTTGAAAAGAGGCACTTCCACGGCGCCGCCAAGTCCCTTACTCACGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGTAAACAGAACCAATGAAATAATTAAAAAACTTAAAGCAGACAAACGTCTCCTGGA
GAAGATAAATGAAAAGCGTGAATCCAACTGCTTGGTGGAAAGAAGCAATCAAGTCAGCTT
ATGGAGAGTTGAAAAGAGGCACTTCCACGGCGCCGCCAAGTCCCTTACTCACGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18549789|ref|XP_086616.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18549789|ref|XP_086616.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-173, gnl|bosTau2|chr16 (52801001-52801173)
               

               
               1-173, gnl|canFam2|chr7 (13925139-13925484)
               

               
               1-173, gnl|dasNov1|scaffold_273542 (768-1119)
               

               
               1-173, gnl|echTel1|scaffold_190392 (663-323)
               

               
               1-173, gnl|hg17|chr1 (209397574-209397947)
               

               
               1-173, gnl|Hg17|chr1 (209397881-209397706)
               

               
               1-173, gnl|loxAfr1|scaffold_5698 (4231-3842)
               

               
               1-173, gnl|mm7|chr1 (190593377-190593031)
               

               
               1-173, gnl|Mm7|chr1 (190593094-190593266)
               

               
               1-173, gnl|oryCun1|scaffold_175161 (54170-53814)
               

               
               1-173, gnl|panTro1|chr1 (193043349-193043725)
               

               
               1-173, gnl|rheMac2|chr1 (157591239-157590867)
               

               
               1-173, gnl|rn3|chr13_random (537120-536785)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-173, gnl|bosTau2|chr16 (52801001-52801173)
               

               
               1-173, gnl|canFam2|chr7 (13925139-13925484)
               

               
               1-173, gnl|dasNov1|scaffold_273542 (768-1119)
               

               
               1-173, gnl|echTel1|scaffold_190392 (663-323)
               

               
               1-173, gnl|hg17|chr1 (209397574-209397947)
               

               
               1-173, gnl|Hg17|chr1 (209397881-209397706)
               

               
               1-173, gnl|loxAfr1|scaffold_5698 (4231-3842)
               

               
               1-173, gnl|mm7|chr1 (190593377-190593031)
               

               
               1-173, gnl|Mm7|chr1 (190593094-190593266)
               

               
               1-173, gnl|oryCun1|scaffold_175161 (54170-53814)
               

               
               1-173, gnl|panTro1|chr1 (193043349-193043725)
               

               
               1-173, gnl|rheMac2|chr1 (157591239-157590867)
               

               
               1-173, gnl|rn3|chr13_random (537120-536785)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	1-173, gnl\|bosTau2\|chr16 (52801001-52801173)
	1-173, gnl\|canFam2\|chr7 (13925139-13925484)
	1-173, gnl\|dasNov1\|scaffold_273542 (768-1119)
	1-173, gnl\|echTel1\|scaffold_190392 (663-323)
	1-173, gnl\|hg17\|chr1 (209397574-209397947)
	1-173, gnl\|Hg17\|chr1 (209397881-209397706)
	1-173, gnl\|loxAfr1\|scaffold_5698 (4231-3842)
	1-173, gnl\|mm7\|chr1 (190593377-190593031)
	1-173, gnl\|Mm7\|chr1 (190593094-190593266)
	1-173, gnl\|oryCun1\|scaffold_175161 (54170-53814)
	1-173, gnl\|panTro1\|chr1 (193043349-193043725)
	1-173, gnl\|rheMac2\|chr1 (157591239-157590867)
	1-173, gnl\|rn3\|chr13_random (537120-536785)