Non-Coding RNA Search

rcte30_f8.y1

Sequence:


               
               AGGTTAGAATCGGTCATTTGTATGACATAGTCATAAATTTCCCTTTGCTCCCCCTTTTTT
TCCTGTTAAACTGAACCAGTGAAGTCAAATACATACCCAGATTTTAGATTAGAACATAAT
TTATGAAAAGGGTTTCTTATCTACAACGTTGCTCTAATTCCAAGAAATGTCTCTCCTTCG
AACTTGTTTATCTACATCTTTGAATAAGTTAGCTATAACAAGATTAAGTGTCTGATAAGG
AGAATTACTTACTTATTAGGCAGTAATAGAATAAAAGAATACTTTTACTGGCACTGAATG
TTAAAGTTGAAAAACTGAAAACTGGCTCAACAGAGTAAATGCACTATGATCGGTAAGGGT
CTTGGTTCTTTATTTGTTAGCATAGATGTGACTATGAATCTCAGTAGTTTCTAGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTAGAATCGGTCATTTGTATGACATAGTCATAAATTTCCCTTTGCTCCCCCTTTTTT
TCCTGTTAAACTGAACCAGTGAAGTCAAATACATACCCAGATTTTAGATTAGAACATAAT
TTATGAAAAGGGTTTCTTATCTACAACGTTGCTCTAATTCCAAGAAATGTCTCTCCTTCG
AACTTGTTTATCTACATCTTTGAATAAGTTAGCTATAACAAGATTAAGTGTCTGATAAGG
AGAATTACTTACTTATTAGGCAGTAATAGAATAAAAGAATACTTTTACTGGCACTGAATG
TTAAAGTTGAAAAACTGAAAACTGGCTCAACAGAGTAAATGCACTATGATCGGTAAGGGT
CTTGGTTCTTTATTTGTTAGCATAGATGTGACTATGAATCTCAGTAGTTTCTAGAACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-325, + strand, RNAz p=0.541933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-325, + strand, RNAz p=0.541933

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-418, gnl|bosTau2|chr28 (8546520-8546925)
               

               
               16-418, gnl|Hg17|chr10 (43169728-43169344)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-418, gnl|bosTau2|chr28 (8546520-8546925)
               

               
               16-418, gnl|Hg17|chr10 (43169728-43169344)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	16-418, gnl\|bosTau2\|chr28 (8546520-8546925)
	16-418, gnl\|Hg17\|chr10 (43169728-43169344)