Non-Coding RNA Search

rcte30_o4.y1

Sequence:


               
               GAGGTGTCAAATCATTGTATCCCCCCGCCCTGCCATCACCACAATCATATCTCTTTCTTT
CCTTCAAAAAGCCTGTGGGTTCTCATGTCATACAACTTGTGTAGAAAAAGCTCCCAGAGC
TTGTCCAGTGCCTTTTCATCAGAAGAAAGTTGCTTTCTGCCTAGATGCACAGAAAGGCAT
GGGAACAGCCTATGAAGGCCATGTCTGGGTAAGTGTCGATTTGGGGGTTCATATGAACTC
TTTTTTTTTTTTTTTgtctttttgccttttccagggccgctcccacggcatatggaggtt
cccaggctaggggtcgaatcagagctgtagccgccggcctacaccagagacacagcaatg
caagatccgagcctcgtctgcagcctacaccacagctcacggcaacgccagatccttact
taaccaactgagcaaggccagggatcaaacccTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTGTCAAATCATTGTATCCCCCCGCCCTGCCATCACCACAATCATATCTCTTTCTTT
CCTTCAAAAAGCCTGTGGGTTCTCATGTCATACAACTTGTGTAGAAAAAGCTCCCAGAGC
TTGTCCAGTGCCTTTTCATCAGAAGAAAGTTGCTTTCTGCCTAGATGCACAGAAAGGCAT
GGGAACAGCCTATGAAGGCCATGTCTGGGTAAGTGTCGATTTGGGGGTTCATATGAACTC
TTTTTTTTTTTTTTTgtctttttgccttttccagggccgctcccacggcatatggaggtt
cccaggctaggggtcgaatcagagctgtagccgccggcctacaccagagacacagcaatg
caagatccgagcctcgtctgcagcctacaccacagctcacggcaacgccagatccttact
taaccaactgagcaaggccagggatcaaacccTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.780878

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.780878

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               41-242, gnl|bosTau2|chr2 (5743454-5743656)
               

               
               41-242, gnl|Hg17|chr1 (223530067-223529872)
               

               
               41-242, gnl|Mm7|chr1 (180117785-180117950)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-242, gnl|bosTau2|chr2 (5743454-5743656)
               

               
               41-242, gnl|Hg17|chr1 (223530067-223529872)
               

               
               41-242, gnl|Mm7|chr1 (180117785-180117950)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	41-242, gnl\|bosTau2\|chr2 (5743454-5743656)
	41-242, gnl\|Hg17\|chr1 (223530067-223529872)
	41-242, gnl\|Mm7\|chr1 (180117785-180117950)