Non-Coding RNA Search

rcte32_h24.y1

Sequence:


               
               TCCCCACCGGGCCCCATGCCCGAGTCCCCAGCAGCCCTGTGCTACTTCCCCATCTCCTGC
CCCACCCCGGCCGAGACCCCTGTGCTGTGCCTGCCCGGCCCCAGGAGGCCCAGTAAAATT
TACCTCGTGTGGTAAGTCGCCCTTGGCAGGGCACACAGCACAGTGGAGGCCACAGGGGGC
GGGGTGTGGGGGGACTTCGAGCTTCCAGAAGAAGGCAGGTGGGCGGAAGGGGGGCCCGGG
CAGAGGGCAGCGCTGTGAACAGCAGCAGGAGGTGTGGCGCAGGGAGCAGGAAGACGGGAC
AGCTGCTGCCACTTCACTGAGCCTGCTAGCACTTCAGGAGTGAGCAACCAATAAAATCCC
ACCATCTCTCGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCACCGGGCCCCATGCCCGAGTCCCCAGCAGCCCTGTGCTACTTCCCCATCTCCTGC
CCCACCCCGGCCGAGACCCCTGTGCTGTGCCTGCCCGGCCCCAGGAGGCCCAGTAAAATT
TACCTCGTGTGGTAAGTCGCCCTTGGCAGGGCACACAGCACAGTGGAGGCCACAGGGGGC
GGGGTGTGGGGGGACTTCGAGCTTCCAGAAGAAGGCAGGTGGGCGGAAGGGGGGCCCGGG
CAGAGGGCAGCGCTGTGAACAGCAGCAGGAGGTGTGGCGCAGGGAGCAGGAAGACGGGAC
AGCTGCTGCCACTTCACTGAGCCTGCTAGCACTTCAGGAGTGAGCAACCAATAAAATCCC
ACCATCTCTCGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-114, - strand, RNAz p=0.713198
               

               
               41-200, - strand, RNAz p=0.999958

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-114, - strand, RNAz p=0.713198
               

               
               41-200, - strand, RNAz p=0.999958

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-361, gnl|bosTau2|chr19 (39548140-39547801)
               

               
               1-361, gnl|canFam2|chr9 (14046027-14046560)
               

               
               1-361, gnl|dasNov1|scaffold_170388 (262-797)
               

               
               1-361, gnl|echTel1|scaffold_319191 (46822-47345)
               

               
               1-361, gnl|hg17|chr17 (58181082-58181607)
               

               
               1-361, gnl|Hg17|chr17 (58181426-58181080)
               

               
               1-361, gnl|mm7|chr11 (105510706-105511219)
               

               
               1-361, gnl|Mm7|chr11 (105511041-105510704)
               

               
               1-361, gnl|monDom2|scaffold_18 (37370831-37370274)
               

               
               1-361, gnl|oryCun1|scaffold_145063 (17790-17295)
               

               
               1-361, gnl|panTro1|chr19 (46977004-46976478)
               

               
               1-361, gnl|rheMac2|chr16 (58258272-58258794)
               

               
               1-361, gnl|rn3|chr10 (94818489-94818989)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-361, gnl|bosTau2|chr19 (39548140-39547801)
               

               
               1-361, gnl|canFam2|chr9 (14046027-14046560)
               

               
               1-361, gnl|dasNov1|scaffold_170388 (262-797)
               

               
               1-361, gnl|echTel1|scaffold_319191 (46822-47345)
               

               
               1-361, gnl|hg17|chr17 (58181082-58181607)
               

               
               1-361, gnl|Hg17|chr17 (58181426-58181080)
               

               
               1-361, gnl|mm7|chr11 (105510706-105511219)
               

               
               1-361, gnl|Mm7|chr11 (105511041-105510704)
               

               
               1-361, gnl|monDom2|scaffold_18 (37370831-37370274)
               

               
               1-361, gnl|oryCun1|scaffold_145063 (17790-17295)
               

               
               1-361, gnl|panTro1|chr19 (46977004-46976478)
               

               
               1-361, gnl|rheMac2|chr16 (58258272-58258794)
               

               
               1-361, gnl|rn3|chr10 (94818489-94818989)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	5-114, - strand, RNAz p=0.713198
	41-200, - strand, RNAz p=0.999958

	1-361, gnl\|bosTau2\|chr19 (39548140-39547801)
	1-361, gnl\|canFam2\|chr9 (14046027-14046560)
	1-361, gnl\|dasNov1\|scaffold_170388 (262-797)
	1-361, gnl\|echTel1\|scaffold_319191 (46822-47345)
	1-361, gnl\|hg17\|chr17 (58181082-58181607)
	1-361, gnl\|Hg17\|chr17 (58181426-58181080)
	1-361, gnl\|mm7\|chr11 (105510706-105511219)
	1-361, gnl\|Mm7\|chr11 (105511041-105510704)
	1-361, gnl\|monDom2\|scaffold_18 (37370831-37370274)
	1-361, gnl\|oryCun1\|scaffold_145063 (17790-17295)
	1-361, gnl\|panTro1\|chr19 (46977004-46976478)
	1-361, gnl\|rheMac2\|chr16 (58258272-58258794)
	1-361, gnl\|rn3\|chr10 (94818489-94818989)