Non-Coding RNA Search

rcut06_j13.y1

Sequence:


               
               AATCTAAGAAAAGGATGACAAGGGTTATATCTGGTTTTCAGCTTTAAGAAGCAGGGACAG
GGTCTGGAGACTTGGGACAGTTCCCAGGGCAGTCTGGTTGTGGAGGGTATGGTGGTGCTC
CGTGGCGGAGGACCCTCCTTTCTGAATCTCTGCTCCTGCATTAGGCGCACCTGCAGGGAG
GTTGGGGCCCTGGGTGCAGATGGGCAATTGCATGCCTAATCACCCATTCAAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTAAGAAAAGGATGACAAGGGTTATATCTGGTTTTCAGCTTTAAGAAGCAGGGACAG
GGTCTGGAGACTTGGGACAGTTCCCAGGGCAGTCTGGTTGTGGAGGGTATGGTGGTGCTC
CGTGGCGGAGGACCCTCCTTTCTGAATCTCTGCTCCTGCATTAGGCGCACCTGCAGGGAG
GTTGGGGCCCTGGGTGCAGATGGGCAATTGCATGCCTAATCACCCATTCAAGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               140-235, - strand, RNAz p=0.879829

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-235, - strand, RNAz p=0.879829

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               118-235, gnl|bosTau2|chr1 (48092014-48091897)
               

               
               118-235, gnl|canFam2|chr34 (23575754-23577125)
               

               
               118-235, gnl|dasNov1|scaffold_2410 (330-1776)
               

               
               118-235, gnl|echTel1|scaffold_296599 (7423-5873)
               

               
               118-235, gnl|hg17|chr3 (189439399-189440891)
               

               
               118-235, gnl|Hg17|chr3 (189439642-189439755)
               

               
               118-235, gnl|loxAfr1|scaffold_61390 (9295-7811)
               

               
               118-235, gnl|mm7|chr16 (24128181-24129477)
               

               
               118-235, gnl|Mm7|chr16 (24128348-24128454)
               

               
               118-235, gnl|oryCun1|scaffold_199023 (169781-171222)
               

               
               118-235, gnl|panTro1|chr2 (193524450-193525946)
               

               
               118-235, gnl|rheMac2|chr2 (180575499-180576994)
               

               
               118-235, gnl|rn3|chr11 (78524168-78522846)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               118-235, gnl|bosTau2|chr1 (48092014-48091897)
               

               
               118-235, gnl|canFam2|chr34 (23575754-23577125)
               

               
               118-235, gnl|dasNov1|scaffold_2410 (330-1776)
               

               
               118-235, gnl|echTel1|scaffold_296599 (7423-5873)
               

               
               118-235, gnl|hg17|chr3 (189439399-189440891)
               

               
               118-235, gnl|Hg17|chr3 (189439642-189439755)
               

               
               118-235, gnl|loxAfr1|scaffold_61390 (9295-7811)
               

               
               118-235, gnl|mm7|chr16 (24128181-24129477)
               

               
               118-235, gnl|Mm7|chr16 (24128348-24128454)
               

               
               118-235, gnl|oryCun1|scaffold_199023 (169781-171222)
               

               
               118-235, gnl|panTro1|chr2 (193524450-193525946)
               

               
               118-235, gnl|rheMac2|chr2 (180575499-180576994)
               

               
               118-235, gnl|rn3|chr11 (78524168-78522846)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	118-235, gnl\|bosTau2\|chr1 (48092014-48091897)
	118-235, gnl\|canFam2\|chr34 (23575754-23577125)
	118-235, gnl\|dasNov1\|scaffold_2410 (330-1776)
	118-235, gnl\|echTel1\|scaffold_296599 (7423-5873)
	118-235, gnl\|hg17\|chr3 (189439399-189440891)
	118-235, gnl\|Hg17\|chr3 (189439642-189439755)
	118-235, gnl\|loxAfr1\|scaffold_61390 (9295-7811)
	118-235, gnl\|mm7\|chr16 (24128181-24129477)
	118-235, gnl\|Mm7\|chr16 (24128348-24128454)
	118-235, gnl\|oryCun1\|scaffold_199023 (169781-171222)
	118-235, gnl\|panTro1\|chr2 (193524450-193525946)
	118-235, gnl\|rheMac2\|chr2 (180575499-180576994)
	118-235, gnl\|rn3\|chr11 (78524168-78522846)