Non-Coding RNA Search

rcut06_j6.y1

Sequence:


               
               AAGGACTTTGAAGCTAAACATACATGCACGAGCACACACGTGTGCATGCACTCACACAGA
CAAGCACACATACCCATACTTTACGCATGTGGGCAGCTAGAAGGAAATCAACTTCCAGTT
GTTGAATTTTAAGAGAAATATTTTACTAGTCAATTGAATCTTAGCTTCTTGAAATGTTAG
GAATGGCATTTGTTCCAAAAGGAAGCTTAAGTAGTGGTATTAAGAGAGTGGCTCTAATGA
GAAGATATTTGTATTGTAAATATTTGTGGTTATggagttcccgttgtggcacagcagaaa
caaatccgactagtaaccatgaggtttcgggttcaatccctggccttccttgctcagtag
gttaaggatccagcgttgccatgaactgtggtgtaggtcacagacgtggcttggatactg
catcgctgtgattgttgcataggctggcagctatagctccgatccgatccctagcctgag
aacccccatatgccgtgagtgaggacctaaaaagCCAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGACTTTGAAGCTAAACATACATGCACGAGCACACACGTGTGCATGCACTCACACAGA
CAAGCACACATACCCATACTTTACGCATGTGGGCAGCTAGAAGGAAATCAACTTCCAGTT
GTTGAATTTTAAGAGAAATATTTTACTAGTCAATTGAATCTTAGCTTCTTGAAATGTTAG
GAATGGCATTTGTTCCAAAAGGAAGCTTAAGTAGTGGTATTAAGAGAGTGGCTCTAATGA
GAAGATATTTGTATTGTAAATATTTGTGGTTATggagttcccgttgtggcacagcagaaa
caaatccgactagtaaccatgaggtttcgggttcaatccctggccttccttgctcagtag
gttaaggatccagcgttgccatgaactgtggtgtaggtcacagacgtggcttggatactg
catcgctgtgattgttgcataggctggcagctatagctccgatccgatccctagcctgag
aacccccatatgccgtgagtgaggacctaaaaagCCAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               33-274, gnl|bosTau2|chr1 (70256417-70256174)
               

               
               33-274, gnl|canFam2|chr34 (29018526-29018790)
               

               
               33-274, gnl|dasNov1|scaffold_658 (98333-98629)
               

               
               33-274, gnl|hg17|chr3 (161062465-161062681)
               

               
               33-274, gnl|loxAfr1|scaffold_7154 (3416-3706)
               

               
               33-274, gnl|mm7|chr3 (68693645-68693895)
               

               
               33-274, gnl|oryCun1|scaffold_180346 (31092-30908)
               

               
               33-274, gnl|panTro1|chr2 (164236414-164236630)
               

               
               33-274, gnl|rheMac2|chr2 (127858907-127858691)
               

               
               33-274, gnl|rn3|chr2 (158538381-158538631)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-274, gnl|bosTau2|chr1 (70256417-70256174)
               

               
               33-274, gnl|canFam2|chr34 (29018526-29018790)
               

               
               33-274, gnl|dasNov1|scaffold_658 (98333-98629)
               

               
               33-274, gnl|hg17|chr3 (161062465-161062681)
               

               
               33-274, gnl|loxAfr1|scaffold_7154 (3416-3706)
               

               
               33-274, gnl|mm7|chr3 (68693645-68693895)
               

               
               33-274, gnl|oryCun1|scaffold_180346 (31092-30908)
               

               
               33-274, gnl|panTro1|chr2 (164236414-164236630)
               

               
               33-274, gnl|rheMac2|chr2 (127858907-127858691)
               

               
               33-274, gnl|rn3|chr2 (158538381-158538631)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	33-274, gnl\|bosTau2\|chr1 (70256417-70256174)
	33-274, gnl\|canFam2\|chr34 (29018526-29018790)
	33-274, gnl\|dasNov1\|scaffold_658 (98333-98629)
	33-274, gnl\|hg17\|chr3 (161062465-161062681)
	33-274, gnl\|loxAfr1\|scaffold_7154 (3416-3706)
	33-274, gnl\|mm7\|chr3 (68693645-68693895)
	33-274, gnl\|oryCun1\|scaffold_180346 (31092-30908)
	33-274, gnl\|panTro1\|chr2 (164236414-164236630)
	33-274, gnl\|rheMac2\|chr2 (127858907-127858691)
	33-274, gnl\|rn3\|chr2 (158538381-158538631)