Non-Coding RNA Search

rcut06_l20.y1

Sequence:


               
               GAGGTACTGGGGCCTCTCCAAGGGTGCAAACAGACCCTAGCAGCTACAAGCTGTAGGTAG
ACAGCTTTCTAGGGGGTACAGATTGAGTTATAAGTTAACCACTAGAAAAGAGATGAATTG
GCATGAATAAAGGACTACAGACACGATGTCCCCAGTGACAGGAATCTTCAAATATCCCTT
GAAAGTTTCCTTCTCTGGGCCTACCTGGCTCTGAGAGTAAAAAGCCAGAATAAGATGTTA
CCAAATCAAGTAAATAAATTCCTTCTTCTCTTTTTACATCTCCATCCTTGCACTCTAAAC
CCAGGGGACTGGAAGTCAGGATTAGCAAACTTGGAGAGGAAAAGGAGGAGAGCGCGAGGA
AGGCAATCACAGTACCTTCCCTGGAGGAAGGTGATTCTCCTCAAAAGGGCCCATCTGGGA
AAGGAGAGGGGTTTTAACCCTAAGTGGAGATTGGAGTTTATTATTCCAGGGGCTGGACTA
TTCTATGTTGAAATAAAGTGGATTGGGTAACTTAAAGTGACCATAGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTACTGGGGCCTCTCCAAGGGTGCAAACAGACCCTAGCAGCTACAAGCTGTAGGTAG
ACAGCTTTCTAGGGGGTACAGATTGAGTTATAAGTTAACCACTAGAAAAGAGATGAATTG
GCATGAATAAAGGACTACAGACACGATGTCCCCAGTGACAGGAATCTTCAAATATCCCTT
GAAAGTTTCCTTCTCTGGGCCTACCTGGCTCTGAGAGTAAAAAGCCAGAATAAGATGTTA
CCAAATCAAGTAAATAAATTCCTTCTTCTCTTTTTACATCTCCATCCTTGCACTCTAAAC
CCAGGGGACTGGAAGTCAGGATTAGCAAACTTGGAGAGGAAAAGGAGGAGAGCGCGAGGA
AGGCAATCACAGTACCTTCCCTGGAGGAAGGTGATTCTCCTCAAAAGGGCCCATCTGGGA
AAGGAGAGGGGTTTTAACCCTAAGTGGAGATTGGAGTTTATTATTCCAGGGGCTGGACTA
TTCTATGTTGAAATAAAGTGGATTGGGTAACTTAAAGTGACCATAGGACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               134-284, - strand, RNAz p=0.998901
               

               
               360-469, + strand, RNAz p=0.948798

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-284, - strand, RNAz p=0.998901
               

               
               360-469, + strand, RNAz p=0.948798

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-520, gnl|bosTau2|chr6 (2840045-2840544)
               

               
               7-520, gnl|Hg17|chr4 (120331031-120331550)
               

               
               7-520, gnl|Mm7|chr3 (122924589-122922727)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-520, gnl|bosTau2|chr6 (2840045-2840544)
               

               
               7-520, gnl|Hg17|chr4 (120331031-120331550)
               

               
               7-520, gnl|Mm7|chr3 (122924589-122922727)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	134-284, - strand, RNAz p=0.998901
	360-469, + strand, RNAz p=0.948798

	7-520, gnl\|bosTau2\|chr6 (2840045-2840544)
	7-520, gnl\|Hg17\|chr4 (120331031-120331550)
	7-520, gnl\|Mm7\|chr3 (122924589-122922727)