Non-Coding RNA Search

rcut07_o12.y1

Sequence:


               
               GTCCAGTGGCCTCTTGCCCTTCGTGCTTCTTGCCCTGGGAATCCTGGCACCTTGGGCCGT
GGAAGGTGCTGAAAATGCTTTGAAAGGGGGAGCCTGCCCTCCTAGAAAAATTGTCCAGTG
CCTTAGATATGAGAAACCCAAGTGCACAAGTGACTGGCAGTGTCCAGACAAGAAGAAATG
TTGCCGAGATACTTGCGGAATCAAATGCCTGAACCCTGTTGCTATCACGAACCCAGTTAA
GGTGAAGCCTGGGAAGTGTCCAGTGGTCTATGGCCAGTGTATGATGCTCAACCCCCCCAA
TCACTGCAAGACAGACAGCCAGTGCCTGGGTGACTTAAAATGCTGCAAGAGCATGTGCGG
GAAAGTCTGCCTCACCCCTGTGAAAGCCTGATTCCTGCCATTTAGAAGAGGCTCTGGATT
CCTACTTTGTGCTGTCTGGGAATTCCATTTCCACTCCCAGACGTGGATCCCTGGGGCAGG
CCGTGATAAAGACTTGGTTCTACCACCACCATCTACTTTGCAGAACATCTCAGCACCCTG
TAGGCTTCCAGGACATGCCTGTTGATTGGTGCATCAATAAATAAGCATATTTCTCTCTGT
AAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAGTGGCCTCTTGCCCTTCGTGCTTCTTGCCCTGGGAATCCTGGCACCTTGGGCCGT
GGAAGGTGCTGAAAATGCTTTGAAAGGGGGAGCCTGCCCTCCTAGAAAAATTGTCCAGTG
CCTTAGATATGAGAAACCCAAGTGCACAAGTGACTGGCAGTGTCCAGACAAGAAGAAATG
TTGCCGAGATACTTGCGGAATCAAATGCCTGAACCCTGTTGCTATCACGAACCCAGTTAA
GGTGAAGCCTGGGAAGTGTCCAGTGGTCTATGGCCAGTGTATGATGCTCAACCCCCCCAA
TCACTGCAAGACAGACAGCCAGTGCCTGGGTGACTTAAAATGCTGCAAGAGCATGTGCGG
GAAAGTCTGCCTCACCCCTGTGAAAGCCTGATTCCTGCCATTTAGAAGAGGCTCTGGATT
CCTACTTTGTGCTGTCTGGGAATTCCATTTCCACTCCCAGACGTGGATCCCTGGGGCAGG
CCGTGATAAAGACTTGGTTCTACCACCACCATCTACTTTGCAGAACATCTCAGCACCCTG
TAGGCTTCCAGGACATGCCTGTTGATTGGTGCATCAATAAATAAGCATATTTCTCTCTGT
AAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               ALK1_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               ALK1_PIG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               73-241, gnl|bosTau2|chr13 (55564225-55564393)
               

               
               73-241, gnl|canFam2|chr24 (35544188-35544536)
               

               
               73-241, gnl|dasNov1|scaffold_20597 (6986-7308)
               

               
               73-241, gnl|hg17|chr20 (43315572-43315920)
               

               
               73-241, gnl|Hg17|chr20 (43315793-43315625)
               

               
               73-241, gnl|loxAfr1|scaffold_20093 (6571-6268)
               

               
               73-241, gnl|mm7|chr2 (164096290-164096615)
               

               
               73-241, gnl|Mm7|chr2 (164096504-164096336)
               

               
               73-241, gnl|monDom2|scaffold_1 (156485212-156484941)
               

               
               73-241, gnl|panTro1|chr21 (45800741-45801089)
               

               
               73-241, gnl|rheMac2|chr10 (19191226-19190878)
               

               
               73-241, gnl|rn3|chr3 (155281221-155281552)
               


               
               385-525, gnl|bosTau2|chr13 (55565594-55565726)
               

               
               385-525, gnl|Mm7|chr2 (164095205-164095025)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-241, gnl|bosTau2|chr13 (55564225-55564393)
               

               
               73-241, gnl|canFam2|chr24 (35544188-35544536)
               

               
               73-241, gnl|dasNov1|scaffold_20597 (6986-7308)
               

               
               73-241, gnl|hg17|chr20 (43315572-43315920)
               

               
               73-241, gnl|Hg17|chr20 (43315793-43315625)
               

               
               73-241, gnl|loxAfr1|scaffold_20093 (6571-6268)
               

               
               73-241, gnl|mm7|chr2 (164096290-164096615)
               

               
               73-241, gnl|Mm7|chr2 (164096504-164096336)
               

               
               73-241, gnl|monDom2|scaffold_1 (156485212-156484941)
               

               
               73-241, gnl|panTro1|chr21 (45800741-45801089)
               

               
               73-241, gnl|rheMac2|chr10 (19191226-19190878)
               

               
               73-241, gnl|rn3|chr3 (155281221-155281552)
               


               
               385-525, gnl|bosTau2|chr13 (55565594-55565726)
               

               
               385-525, gnl|Mm7|chr2 (164095205-164095025)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	73-241, gnl\|bosTau2\|chr13 (55564225-55564393)
	73-241, gnl\|canFam2\|chr24 (35544188-35544536)
	73-241, gnl\|dasNov1\|scaffold_20597 (6986-7308)
	73-241, gnl\|hg17\|chr20 (43315572-43315920)
	73-241, gnl\|Hg17\|chr20 (43315793-43315625)
	73-241, gnl\|loxAfr1\|scaffold_20093 (6571-6268)
	73-241, gnl\|mm7\|chr2 (164096290-164096615)
	73-241, gnl\|Mm7\|chr2 (164096504-164096336)
	73-241, gnl\|monDom2\|scaffold_1 (156485212-156484941)
	73-241, gnl\|panTro1\|chr21 (45800741-45801089)
	73-241, gnl\|rheMac2\|chr10 (19191226-19190878)
	73-241, gnl\|rn3\|chr3 (155281221-155281552)

	385-525, gnl\|bosTau2\|chr13 (55565594-55565726)
	385-525, gnl\|Mm7\|chr2 (164095205-164095025)