Non-Coding RNA Search

rcut16_b23.y1

Sequence:


               
               GGCTGATTTTACTCTAGGGGCACATCTGGTGCTTATTGTCATAAATCTTTTAAAGAATTA
GGTACACTTTTTTTTCTATTAATATGTATAGTTTTGTGATTTGTCACAGTTATGTTTCAT
ATAATCATAAGTTATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGATTTTACTCTAGGGGCACATCTGGTGCTTATTGTCATAAATCTTTTAAAGAATTA
GGTACACTTTTTTTTCTATTAATATGTATAGTTTTGTGATTTGTCACAGTTATGTTTCAT
ATAATCATAAGTTATTTTGT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-140, gnl|bosTau2|chr8 (21367648-21367511)
               

               
               1-140, gnl|canFam2|chr1 (95344982-95345136)
               

               
               1-140, gnl|dasNov1|scaffold_14890 (49113-48960)
               

               
               1-140, gnl|echTel1|scaffold_132305 (375-557)
               

               
               1-140, gnl|galGal2|chrZ_random (1090543-1090698)
               

               
               1-140, gnl|hg17|chr9 (3814540-3814692)
               

               
               1-140, gnl|Hg17|chr9 (3814696-3814559)
               

               
               1-140, gnl|loxAfr1|scaffold_46861 (15464-15617)
               

               
               1-140, gnl|mm7|chr19 (27959302-27959455)
               

               
               1-140, gnl|Mm7|chr19 (27959459-27959322)
               

               
               1-140, gnl|monDom2|scaffold_5 (113030233-113030082)
               

               
               1-140, gnl|oryCun1|scaffold_214700 (376772-376619)
               

               
               1-140, gnl|panTro1|chr11 (3785580-3785732)
               

               
               1-140, gnl|rheMac2|chr15 (73390013-73389861)
               

               
               1-140, gnl|rn3|chr1 (232042415-232042568)
               

               
               1-140, gnl|xenTro1|scaffold_52 (2586382-2586236)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-140, gnl|bosTau2|chr8 (21367648-21367511)
               

               
               1-140, gnl|canFam2|chr1 (95344982-95345136)
               

               
               1-140, gnl|dasNov1|scaffold_14890 (49113-48960)
               

               
               1-140, gnl|echTel1|scaffold_132305 (375-557)
               

               
               1-140, gnl|galGal2|chrZ_random (1090543-1090698)
               

               
               1-140, gnl|hg17|chr9 (3814540-3814692)
               

               
               1-140, gnl|Hg17|chr9 (3814696-3814559)
               

               
               1-140, gnl|loxAfr1|scaffold_46861 (15464-15617)
               

               
               1-140, gnl|mm7|chr19 (27959302-27959455)
               

               
               1-140, gnl|Mm7|chr19 (27959459-27959322)
               

               
               1-140, gnl|monDom2|scaffold_5 (113030233-113030082)
               

               
               1-140, gnl|oryCun1|scaffold_214700 (376772-376619)
               

               
               1-140, gnl|panTro1|chr11 (3785580-3785732)
               

               
               1-140, gnl|rheMac2|chr15 (73390013-73389861)
               

               
               1-140, gnl|rn3|chr1 (232042415-232042568)
               

               
               1-140, gnl|xenTro1|scaffold_52 (2586382-2586236)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	1-140, gnl\|bosTau2\|chr8 (21367648-21367511)
	1-140, gnl\|canFam2\|chr1 (95344982-95345136)
	1-140, gnl\|dasNov1\|scaffold_14890 (49113-48960)
	1-140, gnl\|echTel1\|scaffold_132305 (375-557)
	1-140, gnl\|galGal2\|chrZ_random (1090543-1090698)
	1-140, gnl\|hg17\|chr9 (3814540-3814692)
	1-140, gnl\|Hg17\|chr9 (3814696-3814559)
	1-140, gnl\|loxAfr1\|scaffold_46861 (15464-15617)
	1-140, gnl\|mm7\|chr19 (27959302-27959455)
	1-140, gnl\|Mm7\|chr19 (27959459-27959322)
	1-140, gnl\|monDom2\|scaffold_5 (113030233-113030082)
	1-140, gnl\|oryCun1\|scaffold_214700 (376772-376619)
	1-140, gnl\|panTro1\|chr11 (3785580-3785732)
	1-140, gnl\|rheMac2\|chr15 (73390013-73389861)
	1-140, gnl\|rn3\|chr1 (232042415-232042568)
	1-140, gnl\|xenTro1\|scaffold_52 (2586382-2586236)