Non-Coding RNA Search

rcut22_k11.y1

Sequence:


               
               ACCCTTATTGCTTCCTCCCAGCCAACTTCATATGTTCCTCTGCCTTTCCCGACCTTCAGA
GGCATGTGCATTTCCAACCCCCGCTAGGGTTTCCTTTGCAAATCTCCAGAGAACCTTCTA
CTACAGAACTTGGTGTTGGTCTATCCCCAGGGGCAAGTATATGGGGAAAGCTGAGGCCTG
GAAGCCCTCCGAGGGCAGCAGCTGGGGCCTGTCATTCTTGTATCTCTGTGACCAGAATAT
TGCCTAGAACAGAATGAGTACCCAGATCATTCAAGAACGTATTTGTTGAATttcccatcg
tggctcagtggttaatgaacccaactagtatccatgaggacgtgggtttgatccttggcc
tccctcagtgggttaaggatctggcattgctgtgagcttggcgtaggtcgcagac

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTTATTGCTTCCTCCCAGCCAACTTCATATGTTCCTCTGCCTTTCCCGACCTTCAGA
GGCATGTGCATTTCCAACCCCCGCTAGGGTTTCCTTTGCAAATCTCCAGAGAACCTTCTA
CTACAGAACTTGGTGTTGGTCTATCCCCAGGGGCAAGTATATGGGGAAAGCTGAGGCCTG
GAAGCCCTCCGAGGGCAGCAGCTGGGGCCTGTCATTCTTGTATCTCTGTGACCAGAATAT
TGCCTAGAACAGAATGAGTACCCAGATCATTCAAGAACGTATTTGTTGAATttcccatcg
tggctcagtggttaatgaacccaactagtatccatgaggacgtgggtttgatccttggcc
tccctcagtgggttaaggatctggcattgctgtgagcttggcgtaggtcgcagac

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               69-289, gnl|bosTau2|chrX (23449952-23450173)
               

               
               69-289, gnl|canFam2|chrX (59035299-59035603)
               

               
               69-289, gnl|dasNov1|scaffold_4547 (35444-35146)
               

               
               69-289, gnl|echTel1|scaffold_294068 (2807-2487)
               

               
               69-289, gnl|hg17|chrX (71065503-71065816)
               

               
               69-289, gnl|Hg17|chrX (71065530-71065749)
               

               
               69-289, gnl|mm7|chrX (97323822-97324126)
               

               
               69-289, gnl|Mm7|chrX (97323833-97324060)
               

               
               69-289, gnl|oryCun1|scaffold_194576 (3947-3653)
               

               
               69-289, gnl|panTro1|chrX (73330602-73330915)
               

               
               69-289, gnl|rheMac2|chrX (70981573-70981907)
               

               
               69-289, gnl|rn3|chrX (90137402-90137684)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-289, gnl|bosTau2|chrX (23449952-23450173)
               

               
               69-289, gnl|canFam2|chrX (59035299-59035603)
               

               
               69-289, gnl|dasNov1|scaffold_4547 (35444-35146)
               

               
               69-289, gnl|echTel1|scaffold_294068 (2807-2487)
               

               
               69-289, gnl|hg17|chrX (71065503-71065816)
               

               
               69-289, gnl|Hg17|chrX (71065530-71065749)
               

               
               69-289, gnl|mm7|chrX (97323822-97324126)
               

               
               69-289, gnl|Mm7|chrX (97323833-97324060)
               

               
               69-289, gnl|oryCun1|scaffold_194576 (3947-3653)
               

               
               69-289, gnl|panTro1|chrX (73330602-73330915)
               

               
               69-289, gnl|rheMac2|chrX (70981573-70981907)
               

               
               69-289, gnl|rn3|chrX (90137402-90137684)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	69-289, gnl\|bosTau2\|chrX (23449952-23450173)
	69-289, gnl\|canFam2\|chrX (59035299-59035603)
	69-289, gnl\|dasNov1\|scaffold_4547 (35444-35146)
	69-289, gnl\|echTel1\|scaffold_294068 (2807-2487)
	69-289, gnl\|hg17\|chrX (71065503-71065816)
	69-289, gnl\|Hg17\|chrX (71065530-71065749)
	69-289, gnl\|mm7\|chrX (97323822-97324126)
	69-289, gnl\|Mm7\|chrX (97323833-97324060)
	69-289, gnl\|oryCun1\|scaffold_194576 (3947-3653)
	69-289, gnl\|panTro1\|chrX (73330602-73330915)
	69-289, gnl\|rheMac2\|chrX (70981573-70981907)
	69-289, gnl\|rn3\|chrX (90137402-90137684)