rcut33_a17.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGGAGCGTGCTCTGCTGGAAAATGAGAAGAAGAAACGTGAGATGGCAGAAAAGGAAA AAGAGAAGATTGAACGGGAAAAGGAGGAACTGATGGAGAGGCTGAAGCAGATTGAGGAAC AGACTAAGAAGGCTCAGCAAGAACTGGAAGAACAGACCCGCAGGGCCCTGGAACTTGAAC AGGAACGGAAGCGTGCCCAGAGTGAGGCTGAAAAACTGGCCAAAGAGCGTCAGGAAGCTG AAGAAGCCAAGGAGGCCCTGTTGAAGGCCTCCCGGGACCAGAAGAAGACCCAGGAACAGC TGGCCTTGGAAATGGCCGAGCTGACAGCTCGGATCTCCCAGCTGGAGATGGCCCGACAGA AGAAGGAGAGTGAGGCTGCGGAATGGCAGCAGAAGGCTCAGATGGTACAAGAAGACTTGG AGAAGACTCGTGCAGAGCTGAAGACTGCCATGAGCACGCCTCATGTGGCAGAGCCTGCTG AGAATGATCAGGATGAGCAGGATGAAAATGGGGCAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGGAGCGTGCTCTGCTGGAAAATGAGAAGAAGAAACGTGAGATGGCAGAAAAGGAAA AAGAGAAGATTGAACGGGAAAAGGAGGAACTGATGGAGAGGCTGAAGCAGATTGAGGAAC AGACTAAGAAGGCTCAGCAAGAACTGGAAGAACAGACCCGCAGGGCCCTGGAACTTGAAC AGGAACGGAAGCGTGCCCAGAGTGAGGCTGAAAAACTGGCCAAAGAGCGTCAGGAAGCTG AAGAAGCCAAGGAGGCCCTGTTGAAGGCCTCCCGGGACCAGAAGAAGACCCAGGAACAGC TGGCCTTGGAAATGGCCGAGCTGACAGCTCGGATCTCCCAGCTGGAGATGGCCCGACAGA AGAAGGAGAGTGAGGCTGCGGAATGGCAGCAGAAGGCTCAGATGGTACAAGAAGACTTGG AGAAGACTCGTGCAGAGCTGAAGACTGCCATGAGCACGCCTCATGTGGCAGAGCCTGCTG AGAATGATCAGGATGAGCAGGATGAAAATGGGGCAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 394-512, + strand, RNAz p=0.856393 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-512, + strand, RNAz p=0.856393 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 140-303, gnl|bosTau2|chrX (27951968-27952131) | |
| 140-303, gnl|canFam2|chr5 (25617653-25617813) | |
| 140-303, gnl|canFam2|chrX (53695049-53695208) | |
| 140-303, gnl|danRer3|chrNA (22395765-22395605) | |
| 140-303, gnl|danRer3|chrNA (22395764-22395605) | |
| 140-303, gnl|dasNov1|scaffold_31152 (1553-1712) | |
| 140-303, gnl|dasNov1|scaffold_59573 (9442-9599) | |
| 140-303, gnl|echTel1|scaffold_221654 (2936-2777) | |
| 140-303, gnl|echTel1|scaffold_221654 (2936-2777) | |
| 140-303, gnl|fr1|chrUn (232203478-232203684) | |
| 140-303, gnl|fr1|chrUn (203056295-203056453) | |
| 140-303, gnl|galGal2|chr1 (171595816-171595976) | |
| 140-303, gnl|galGal2|chr4 (1559991-1559832) | |
| 140-303, gnl|hg17|chr5 (25946459-25946618) | |
| 140-303, gnl|hg17|chrX (27297019-27297179) | |
| 140-303, gnl|Hg17|chrX (64740059-64740222) | |
| 140-303, gnl|loxAfr1|scaffold_1964 (40231-40072) | |
| 140-303, gnl|loxAfr1|scaffold_38734 (10616-10455) | |
| 140-303, gnl|mm7|chr9 (52059392-52059552) | |
| 140-303, gnl|mm7|chrX (91491106-91491265) | |
| 140-303, gnl|Mm7|chrX (91491103-91491266) | |
| 140-303, gnl|monDom2|scaffold_1 (89800651-89800811) | |
| 140-303, gnl|monDom2|scaffold_138 (2428927-2428768) | |
| 140-303, gnl|oryCun1|scaffold_210355 (160459-160618) | |
| 140-303, gnl|oryCun1|scaffold_48777 (1694-1534) | |
| 140-303, gnl|panTro1|chr4 (91487061-91486902) | |
| 140-303, gnl|panTro1|chrX (28163717-28163877) | |
| 140-303, gnl|rheMac2|chrX (25364416-25364576) | |
| 140-303, gnl|rheMac2|chrX (64300368-64300527) | |
| 140-303, gnl|rn3|chr8 (55461234-55461393) | |
| 140-303, gnl|rn3|chrX (83854794-83854953) | |
| 140-303, gnl|tetNig1|chr3 (6335153-6334994) | |
| 140-303, gnl|tetNig1|chr7 (5750035-5749876) | |
| 140-303, gnl|xenTro1|scaffold_396 (568601-568757) | |
| 140-303, gnl|xenTro1|scaffold_396 (568598-568757) | |
| 394-518, gnl|bosTau2|chrX (27953748-27953872) | |
| 394-518, gnl|canFam2|chrX (53696911-53697135) | |
| 394-518, gnl|danRer3|chrNA (22393125-22392896) | |
| 394-518, gnl|dasNov1|scaffold_31152 (3412-3636) | |
| 394-518, gnl|echTel1|scaffold_225947 (14075-14290) | |
| 394-518, gnl|fr1|chrUn (203057320-203057549) | |
| 394-518, gnl|galGal2|chr4 (1558825-1558592) | |
| 394-518, gnl|hg17|chr5 (25946711-25946935) | |
| 394-518, gnl|Hg17|chrX (64741851-64741975) | |
| 394-518, gnl|loxAfr1|scaffold_1964 (38365-38141) | |
| 394-518, gnl|mm7|chrX (91493279-91493503) | |
| 394-518, gnl|Mm7|chrX (91493278-91493402) | |
| 394-518, gnl|monDom2|scaffold_138 (2427099-2426887) | |
| 394-518, gnl|oryCun1|scaffold_210355 (162225-162449) | |
| 394-518, gnl|panTro1|chr4 (91486809-91486585) | |
| 394-518, gnl|rheMac2|chrX (64302185-64302409) | |
| 394-518, gnl|rn3|chrX (83856373-83856597) | |
| 394-518, gnl|tetNig1|chr7 (5749130-5748901) | |
| 394-518, gnl|xenTro1|scaffold_396 (569921-570154) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 140-303, gnl|bosTau2|chrX (27951968-27952131) | |
| 140-303, gnl|canFam2|chr5 (25617653-25617813) | |
| 140-303, gnl|canFam2|chrX (53695049-53695208) | |
| 140-303, gnl|danRer3|chrNA (22395765-22395605) | |
| 140-303, gnl|danRer3|chrNA (22395764-22395605) | |
| 140-303, gnl|dasNov1|scaffold_31152 (1553-1712) | |
| 140-303, gnl|dasNov1|scaffold_59573 (9442-9599) | |
| 140-303, gnl|echTel1|scaffold_221654 (2936-2777) | |
| 140-303, gnl|echTel1|scaffold_221654 (2936-2777) | |
| 140-303, gnl|fr1|chrUn (232203478-232203684) | |
| 140-303, gnl|fr1|chrUn (203056295-203056453) | |
| 140-303, gnl|galGal2|chr1 (171595816-171595976) | |
| 140-303, gnl|galGal2|chr4 (1559991-1559832) | |
| 140-303, gnl|hg17|chr5 (25946459-25946618) | |
| 140-303, gnl|hg17|chrX (27297019-27297179) | |
| 140-303, gnl|Hg17|chrX (64740059-64740222) | |
| 140-303, gnl|loxAfr1|scaffold_1964 (40231-40072) | |
| 140-303, gnl|loxAfr1|scaffold_38734 (10616-10455) | |
| 140-303, gnl|mm7|chr9 (52059392-52059552) | |
| 140-303, gnl|mm7|chrX (91491106-91491265) | |
| 140-303, gnl|Mm7|chrX (91491103-91491266) | |
| 140-303, gnl|monDom2|scaffold_1 (89800651-89800811) | |
| 140-303, gnl|monDom2|scaffold_138 (2428927-2428768) | |
| 140-303, gnl|oryCun1|scaffold_210355 (160459-160618) | |
| 140-303, gnl|oryCun1|scaffold_48777 (1694-1534) | |
| 140-303, gnl|panTro1|chr4 (91487061-91486902) | |
| 140-303, gnl|panTro1|chrX (28163717-28163877) | |
| 140-303, gnl|rheMac2|chrX (25364416-25364576) | |
| 140-303, gnl|rheMac2|chrX (64300368-64300527) | |
| 140-303, gnl|rn3|chr8 (55461234-55461393) | |
| 140-303, gnl|rn3|chrX (83854794-83854953) | |
| 140-303, gnl|tetNig1|chr3 (6335153-6334994) | |
| 140-303, gnl|tetNig1|chr7 (5750035-5749876) | |
| 140-303, gnl|xenTro1|scaffold_396 (568601-568757) | |
| 140-303, gnl|xenTro1|scaffold_396 (568598-568757) | |
| 394-518, gnl|bosTau2|chrX (27953748-27953872) | |
| 394-518, gnl|canFam2|chrX (53696911-53697135) | |
| 394-518, gnl|danRer3|chrNA (22393125-22392896) | |
| 394-518, gnl|dasNov1|scaffold_31152 (3412-3636) | |
| 394-518, gnl|echTel1|scaffold_225947 (14075-14290) | |
| 394-518, gnl|fr1|chrUn (203057320-203057549) | |
| 394-518, gnl|galGal2|chr4 (1558825-1558592) | |
| 394-518, gnl|hg17|chr5 (25946711-25946935) | |
| 394-518, gnl|Hg17|chrX (64741851-64741975) | |
| 394-518, gnl|loxAfr1|scaffold_1964 (38365-38141) | |
| 394-518, gnl|mm7|chrX (91493279-91493503) | |
| 394-518, gnl|Mm7|chrX (91493278-91493402) | |
| 394-518, gnl|monDom2|scaffold_138 (2427099-2426887) | |
| 394-518, gnl|oryCun1|scaffold_210355 (162225-162449) | |
| 394-518, gnl|panTro1|chr4 (91486809-91486585) | |
| 394-518, gnl|rheMac2|chrX (64302185-64302409) | |
| 394-518, gnl|rn3|chrX (83856373-83856597) | |
| 394-518, gnl|tetNig1|chr7 (5749130-5748901) | |
| 394-518, gnl|xenTro1|scaffold_396 (569921-570154) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) |