Non-Coding RNA Search

rcut35_f22.y1

Sequence:


               
               CAGGAACTCCCAAACCAAAGCTTTTTAAAGTTACTTGCCATATAAATTAGAACTAGGTTT
AGCAGTGAGTTGACAGAAAAATCAATATAAGAGTGGATTAGGCCAGATAGAAGTGAGTTT
CTCTCTTACATTCAAAAAGTCTGGAGTTAAGCAGTCTGGGAAGGTCTGGCTATACCAGCA
TCAGGGGCCTGGGCTCTTTTTAGCTTGCTGCTGTCATCCTCAAGATGAGCTTCCAATTTG
TAAtccaaaatggctgctctagctccagccatcatttgtgcattccagtcagcaggaaAA
GGGAAGGAGGAGAAGTGCCCATCCTTTTCCTTTAAGGACAAATCCTGTGGCCATCATTAG
TAAGTCTAAAAATAACAAATGCTGAAGAGCGTGTGGAGAAAAGGGTAtgggaatgtaaat
tggtacaaccactgtggaaaacagtatggtggtacctcagaaactaaacatagaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAACTCCCAAACCAAAGCTTTTTAAAGTTACTTGCCATATAAATTAGAACTAGGTTT
AGCAGTGAGTTGACAGAAAAATCAATATAAGAGTGGATTAGGCCAGATAGAAGTGAGTTT
CTCTCTTACATTCAAAAAGTCTGGAGTTAAGCAGTCTGGGAAGGTCTGGCTATACCAGCA
TCAGGGGCCTGGGCTCTTTTTAGCTTGCTGCTGTCATCCTCAAGATGAGCTTCCAATTTG
TAAtccaaaatggctgctctagctccagccatcatttgtgcattccagtcagcaggaaAA
GGGAAGGAGGAGAAGTGCCCATCCTTTTCCTTTAAGGACAAATCCTGTGGCCATCATTAG
TAAGTCTAAAAATAACAAATGCTGAAGAGCGTGTGGAGAAAAGGGTAtgggaatgtaaat
tggtacaaccactgtggaaaacagtatggtggtacctcagaaactaaacatagaa

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               18-157, gnl|bosTau2|chr15 (27551997-27551858)
               

               
               18-157, gnl|canFam2|chr21 (37829525-37829716)
               

               
               18-157, gnl|dasNov1|scaffold_35395 (5560-5756)
               

               
               18-157, gnl|echTel1|scaffold_319396 (40871-41023)
               

               
               18-157, gnl|hg17|chr11 (11527323-11527509)
               

               
               18-157, gnl|Hg17|chr11 (11527525-11527400)
               

               
               18-157, gnl|loxAfr1|scaffold_504 (50493-50652)
               

               
               18-157, gnl|mm7|chr7 (107622202-107622351)
               

               
               18-157, gnl|oryCun1|scaffold_207859 (48407-48605)
               

               
               18-157, gnl|panTro1|chr9 (11779236-11779422)
               

               
               18-157, gnl|rheMac2|chr14 (60376171-60375984)
               

               
               18-157, gnl|rn3|chr1 (169606170-169606316)
               


               
               158-347, gnl|bosTau2|chr15 (27551835-27551646)
               

               
               158-347, gnl|Hg17|chr11 (11527395-11527208)
               

               
               158-347, gnl|Mm7|chr7 (107622274-107622084)
               


               
               348-475, gnl|bosTau2|chr21 (2420008-2420135)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-157, gnl|bosTau2|chr15 (27551997-27551858)
               

               
               18-157, gnl|canFam2|chr21 (37829525-37829716)
               

               
               18-157, gnl|dasNov1|scaffold_35395 (5560-5756)
               

               
               18-157, gnl|echTel1|scaffold_319396 (40871-41023)
               

               
               18-157, gnl|hg17|chr11 (11527323-11527509)
               

               
               18-157, gnl|Hg17|chr11 (11527525-11527400)
               

               
               18-157, gnl|loxAfr1|scaffold_504 (50493-50652)
               

               
               18-157, gnl|mm7|chr7 (107622202-107622351)
               

               
               18-157, gnl|oryCun1|scaffold_207859 (48407-48605)
               

               
               18-157, gnl|panTro1|chr9 (11779236-11779422)
               

               
               18-157, gnl|rheMac2|chr14 (60376171-60375984)
               

               
               18-157, gnl|rn3|chr1 (169606170-169606316)
               


               
               158-347, gnl|bosTau2|chr15 (27551835-27551646)
               

               
               158-347, gnl|Hg17|chr11 (11527395-11527208)
               

               
               158-347, gnl|Mm7|chr7 (107622274-107622084)
               


               
               348-475, gnl|bosTau2|chr21 (2420008-2420135)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	18-157, gnl\|bosTau2\|chr15 (27551997-27551858)
	18-157, gnl\|canFam2\|chr21 (37829525-37829716)
	18-157, gnl\|dasNov1\|scaffold_35395 (5560-5756)
	18-157, gnl\|echTel1\|scaffold_319396 (40871-41023)
	18-157, gnl\|hg17\|chr11 (11527323-11527509)
	18-157, gnl\|Hg17\|chr11 (11527525-11527400)
	18-157, gnl\|loxAfr1\|scaffold_504 (50493-50652)
	18-157, gnl\|mm7\|chr7 (107622202-107622351)
	18-157, gnl\|oryCun1\|scaffold_207859 (48407-48605)
	18-157, gnl\|panTro1\|chr9 (11779236-11779422)
	18-157, gnl\|rheMac2\|chr14 (60376171-60375984)
	18-157, gnl\|rn3\|chr1 (169606170-169606316)

	158-347, gnl\|bosTau2\|chr15 (27551835-27551646)
	158-347, gnl\|Hg17\|chr11 (11527395-11527208)
	158-347, gnl\|Mm7\|chr7 (107622274-107622084)

	348-475, gnl\|bosTau2\|chr21 (2420008-2420135)