Non-Coding RNA Search

rcut36_o9.y1

Sequence:


               
               GGAATGGCCAAGTATCAGGCAGCTGTGTCCAAACAAAGCAGTTCAACCAACTATACAAAC
GAGTTAAAAGCCATTGGTGGTGAAATCAAAACTCATAAATTGGAGCAAAAGGAGAATGTG
CCCCCAGGTCCTGAGGTCTGCATCTCCCATCAGGATGGAGAAAAGGTTTCTGCATCTGAG
AATAGCCTGGCAGTCTGTTCCACCCCGCCTGAAGATGATTCCTCAGGTAAATCCCAGGTT
AAGAGTGATGTCCAGCAGCCTGTGCATCCCAAGCCACTAAGTCCAGTTGCCAGAGCCTCC
AGCCTTTCTGAAAGTTCTCCTCCCAAAGCAGTGAAGGTATGATGGTAATTTCTCTTGGTG
CCTTTAGATGTTGCTTTACTAGTAGAGCCCTTTGCACCTTGTATCATTATGTTCAGTATA
AACATTTTTGCTTTCCTGGGGATGAAAATGCCAAATAAGGCACACTTGGGCCAGTCGCTT
TCCCTGGAAATCTTGCTGCTTTTGCTTAGGTGTTTGAGCCAGCAGAGGGGAGGCTCACTA
TTATTGCTTAGTTTGGAAAGTTCATGAAAGAAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGGCCAAGTATCAGGCAGCTGTGTCCAAACAAAGCAGTTCAACCAACTATACAAAC
GAGTTAAAAGCCATTGGTGGTGAAATCAAAACTCATAAATTGGAGCAAAAGGAGAATGTG
CCCCCAGGTCCTGAGGTCTGCATCTCCCATCAGGATGGAGAAAAGGTTTCTGCATCTGAG
AATAGCCTGGCAGTCTGTTCCACCCCGCCTGAAGATGATTCCTCAGGTAAATCCCAGGTT
AAGAGTGATGTCCAGCAGCCTGTGCATCCCAAGCCACTAAGTCCAGTTGCCAGAGCCTCC
AGCCTTTCTGAAAGTTCTCCTCCCAAAGCAGTGAAGGTATGATGGTAATTTCTCTTGGTG
CCTTTAGATGTTGCTTTACTAGTAGAGCCCTTTGCACCTTGTATCATTATGTTCAGTATA
AACATTTTTGCTTTCCTGGGGATGAAAATGCCAAATAAGGCACACTTGGGCCAGTCGCTT
TCCCTGGAAATCTTGCTGCTTTTGCTTAGGTGTTTGAGCCAGCAGAGGGGAGGCTCACTA
TTATTGCTTAGTTTGGAAAGTTCATGAAAGAAAACC

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               58-167, gnl|bosTau2|chr5 (22945986-22946095)
               

               
               58-167, gnl|canFam2|chr27 (7551499-7551360)
               

               
               58-167, gnl|dasNov1|scaffold_4379 (30412-30551)
               

               
               58-167, gnl|echTel1|scaffold_315601 (103865-104004)
               

               
               58-167, gnl|galGal2|chrUn (6330971-6330832)
               

               
               58-167, gnl|hg17|chr12 (48880808-48880947)
               

               
               58-167, gnl|Hg17|chr12 (48880934-48880825)
               

               
               58-167, gnl|loxAfr1|scaffold_456 (143519-143658)
               

               
               58-167, gnl|mm7|chr15 (99787338-99787471)
               

               
               58-167, gnl|Mm7|chr15 (99787457-99787354)
               

               
               58-167, gnl|monDom2|scaffold_181 (1236150-1236289)
               

               
               58-167, gnl|oryCun1|scaffold_200918 (49799-49937)
               

               
               58-167, gnl|panTro1|chr10 (50066580-50066719)
               

               
               58-167, gnl|rheMac2|chr11 (47329818-47329957)
               

               
               58-167, gnl|rn3|chr7 (138617252-138617385)
               


               
               224-558, gnl|bosTau2|chr5 (22952322-22952658)
               

               
               224-558, gnl|Hg17|chr12 (48872614-48872275)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-167, gnl|bosTau2|chr5 (22945986-22946095)
               

               
               58-167, gnl|canFam2|chr27 (7551499-7551360)
               

               
               58-167, gnl|dasNov1|scaffold_4379 (30412-30551)
               

               
               58-167, gnl|echTel1|scaffold_315601 (103865-104004)
               

               
               58-167, gnl|galGal2|chrUn (6330971-6330832)
               

               
               58-167, gnl|hg17|chr12 (48880808-48880947)
               

               
               58-167, gnl|Hg17|chr12 (48880934-48880825)
               

               
               58-167, gnl|loxAfr1|scaffold_456 (143519-143658)
               

               
               58-167, gnl|mm7|chr15 (99787338-99787471)
               

               
               58-167, gnl|Mm7|chr15 (99787457-99787354)
               

               
               58-167, gnl|monDom2|scaffold_181 (1236150-1236289)
               

               
               58-167, gnl|oryCun1|scaffold_200918 (49799-49937)
               

               
               58-167, gnl|panTro1|chr10 (50066580-50066719)
               

               
               58-167, gnl|rheMac2|chr11 (47329818-47329957)
               

               
               58-167, gnl|rn3|chr7 (138617252-138617385)
               


               
               224-558, gnl|bosTau2|chr5 (22952322-22952658)
               

               
               224-558, gnl|Hg17|chr12 (48872614-48872275)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	58-167, gnl\|bosTau2\|chr5 (22945986-22946095)
	58-167, gnl\|canFam2\|chr27 (7551499-7551360)
	58-167, gnl\|dasNov1\|scaffold_4379 (30412-30551)
	58-167, gnl\|echTel1\|scaffold_315601 (103865-104004)
	58-167, gnl\|galGal2\|chrUn (6330971-6330832)
	58-167, gnl\|hg17\|chr12 (48880808-48880947)
	58-167, gnl\|Hg17\|chr12 (48880934-48880825)
	58-167, gnl\|loxAfr1\|scaffold_456 (143519-143658)
	58-167, gnl\|mm7\|chr15 (99787338-99787471)
	58-167, gnl\|Mm7\|chr15 (99787457-99787354)
	58-167, gnl\|monDom2\|scaffold_181 (1236150-1236289)
	58-167, gnl\|oryCun1\|scaffold_200918 (49799-49937)
	58-167, gnl\|panTro1\|chr10 (50066580-50066719)
	58-167, gnl\|rheMac2\|chr11 (47329818-47329957)
	58-167, gnl\|rn3\|chr7 (138617252-138617385)

	224-558, gnl\|bosTau2\|chr5 (22952322-22952658)
	224-558, gnl\|Hg17\|chr12 (48872614-48872275)