Non-Coding RNA Search

rcut40_l2.y1

Sequence:


               
               TCCACAGCCACTGACAGCCCCTGAGTAGGTGACTAAGGGCTGACAGGATTAGCATGTTAA
CTTGGCTGCTGTCCAGAATGAGAAGCCATGTTCGATGGCAGTTGGAGTTTGTGTGCTGGG
CATTGCTGGGTCTATAAATATGATAAGCAAGTGGTGACAGAATTATAGTATAAGGTGATG
TACTACATGGAGATCATAAAGGATTTGGTTTTAGGACTTAAGTAGAAAATCCCACTCCTA
CAGCATATTACCCAACAATATTCAGATAATGAGCTTTTGGAGAATATTTTTTTTTTTCCC
TACCACTAGGAAGATTTACCTGGGAACTGTCTAAAGTCTACACATATATTTCCAAAGCCT
TTAAACACCAACTGTAGCATGGAGGGTGGGGGAGGGGGGTGGCAGAAGCCGAAATGCCTC
AAAAGCCATTTAAGTGTTACATTGCAGGATTTTCAGTCCTTCTCATTATGTGACAGTAGA
TAAATATAGACATTATACTCAACACTGCCCTATAGTATCACAATGGTCCAAATGCCAGAG
CTTACAGATAATGTCATCACAGTGCCTAGAAACTCAAACTGTAATATACCGTAGCATTTT
CTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACAGCCACTGACAGCCCCTGAGTAGGTGACTAAGGGCTGACAGGATTAGCATGTTAA
CTTGGCTGCTGTCCAGAATGAGAAGCCATGTTCGATGGCAGTTGGAGTTTGTGTGCTGGG
CATTGCTGGGTCTATAAATATGATAAGCAAGTGGTGACAGAATTATAGTATAAGGTGATG
TACTACATGGAGATCATAAAGGATTTGGTTTTAGGACTTAAGTAGAAAATCCCACTCCTA
CAGCATATTACCCAACAATATTCAGATAATGAGCTTTTGGAGAATATTTTTTTTTTTCCC
TACCACTAGGAAGATTTACCTGGGAACTGTCTAAAGTCTACACATATATTTCCAAAGCCT
TTAAACACCAACTGTAGCATGGAGGGTGGGGGAGGGGGGTGGCAGAAGCCGAAATGCCTC
AAAAGCCATTTAAGTGTTACATTGCAGGATTTTCAGTCCTTCTCATTATGTGACAGTAGA
TAAATATAGACATTATACTCAACACTGCCCTATAGTATCACAATGGTCCAAATGCCAGAG
CTTACAGATAATGTCATCACAGTGCCTAGAAACTCAAACTGTAATATACCGTAGCATTTT
CTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-317, + strand, RNAz p=0.999664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-317, + strand, RNAz p=0.999664

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               36-211, + strand, RNAmicro p=0.974993

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               36-211, + strand, RNAmicro p=0.974993

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               5-286, laa07c05.y1 8 5 week embryo anterior tongue 8 5 EAT Homo sapiens 
(gb|BM874700.1|), blast E-value=0, identity=90.85% 
               

               
               5-286, NISC_nb05e01.y1 COGENE 6E MAN Homo sapiens cDNA clone IMAGE 
(gb|CB217862.1|), blast E-value=0, identity=90.85% 
               

               
               5-286, NISC_nc09g03.y1 COGENE 6E MAX Homo sapiens cDNA clone IMAGE 
(gb|CB410146.1|), blast E-value=0, identity=90.85% 
               

               
               4-286, 1371499 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535469.1|), 
blast E-value=0, identity=93.99% 
               

               
               5-286, TC105992 Human breast cancer tissue, large insert, pCMV expression 
(gb|DN996435.1|), blast E-value=0, identity=90.85% 
               

               
               4-286, LB03053.CR_E18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE379042.1|), 
blast E-value=0, identity=93.99%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               5-286, laa07c05.y1 8 5 week embryo anterior tongue 8 5 EAT Homo sapiens 
(gb|BM874700.1|), blast E-value=0, identity=90.85% 
               

               
               5-286, NISC_nb05e01.y1 COGENE 6E MAN Homo sapiens cDNA clone IMAGE 
(gb|CB217862.1|), blast E-value=0, identity=90.85% 
               

               
               5-286, NISC_nc09g03.y1 COGENE 6E MAX Homo sapiens cDNA clone IMAGE 
(gb|CB410146.1|), blast E-value=0, identity=90.85% 
               

               
               4-286, 1371499 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535469.1|), 
blast E-value=0, identity=93.99% 
               

               
               5-286, TC105992 Human breast cancer tissue, large insert, pCMV expression 
(gb|DN996435.1|), blast E-value=0, identity=90.85% 
               

               
               4-286, LB03053.CR_E18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE379042.1|), 
blast E-value=0, identity=93.99%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-605, gnl|bosTau2|chr24 (35768266-35768860)
               

               
               1-605, gnl|Hg17|chr18 (40901045-40901637)
               

               
               1-605, gnl|Mm7|chr18 (79037295-79036706)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-605, gnl|bosTau2|chr24 (35768266-35768860)
               

               
               1-605, gnl|Hg17|chr18 (40901045-40901637)
               

               
               1-605, gnl|Mm7|chr18 (79037295-79036706)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	5-286, laa07c05.y1 8 5 week embryo anterior tongue 8 5 EAT Homo sapiens (gb\|BM874700.1\|), blast E-value=0, identity=90.85%
	5-286, NISC_nb05e01.y1 COGENE 6E MAN Homo sapiens cDNA clone IMAGE (gb\|CB217862.1\|), blast E-value=0, identity=90.85%
	5-286, NISC_nc09g03.y1 COGENE 6E MAX Homo sapiens cDNA clone IMAGE (gb\|CB410146.1\|), blast E-value=0, identity=90.85%
	4-286, 1371499 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN535469.1\|), blast E-value=0, identity=93.99%
	5-286, TC105992 Human breast cancer tissue, large insert, pCMV expression (gb\|DN996435.1\|), blast E-value=0, identity=90.85%
	4-286, LB03053.CR_E18 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE379042.1\|), blast E-value=0, identity=93.99%

	1-605, gnl\|bosTau2\|chr24 (35768266-35768860)
	1-605, gnl\|Hg17\|chr18 (40901045-40901637)
	1-605, gnl\|Mm7\|chr18 (79037295-79036706)