Non-Coding RNA Search

rdbla0101_h6.y1

Sequence:


               
               GATTTTTAAGAACCTGCTGGCAAGAGTTTAACTTGTCTTCAGCATATTCTGATTGTATCA
TAATCATTTTCTGCTGTTGCAGAGGATGTGAATACACTTAAGGAGCTCACAGAATCCCAG
TAGCACAAATTGGGCTTTGGCAAATCGTGTATTTTGTGTATAGAAGGAATTTAAGGAGAG
GTATTACTTATTTTCATATTGTATTTTAAGTGTTTCTCTGATCAAATTTTTTTACTTCCT
CCTCCTAGTCCTCCCCACCTCCCTCCTCCTAGTCCTCCCCACCTCCCTCCTTTTCCAATT
CAGTATTTGGAGTTCAACACTGTCTCTCAATCAGATCATCTTGATCTTTTTCTTTATTTC
CCTTCCCCTCCCTAAATCCCATATCTTGGTCATAAATATTGCATTATTCACACTTTCAAA
CTGTGTATTTTCTTACAATAAAAAATGATGAAAAAAAAAAGGCTTTACTTCTTTTGCATG
CACTTTAAAAAAAACAGAACATTTTTCAGGTTCCAAGGAAGAGCATGATAACTGTCAGAG
CTTTTAATTATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTTTAAGAACCTGCTGGCAAGAGTTTAACTTGTCTTCAGCATATTCTGATTGTATCA
TAATCATTTTCTGCTGTTGCAGAGGATGTGAATACACTTAAGGAGCTCACAGAATCCCAG
TAGCACAAATTGGGCTTTGGCAAATCGTGTATTTTGTGTATAGAAGGAATTTAAGGAGAG
GTATTACTTATTTTCATATTGTATTTTAAGTGTTTCTCTGATCAAATTTTTTTACTTCCT
CCTCCTAGTCCTCCCCACCTCCCTCCTCCTAGTCCTCCCCACCTCCCTCCTTTTCCAATT
CAGTATTTGGAGTTCAACACTGTCTCTCAATCAGATCATCTTGATCTTTTTCTTTATTTC
CCTTCCCCTCCCTAAATCCCATATCTTGGTCATAAATATTGCATTATTCACACTTTCAAA
CTGTGTATTTTCTTACAATAAAAAATGATGAAAAAAAAAAGGCTTTACTTCTTTTGCATG
CACTTTAAAAAAAACAGAACATTTTTCAGGTTCCAAGGAAGAGCATGATAACTGTCAGAG
CTTTTAATTATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-267, - strand, RNAz p=0.963926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-267, - strand, RNAz p=0.963926

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-267, gnl|bosTau2|chr17 (32112612-32112877)
               

               
               1-267, gnl|Hg17|chr12 (117050881-117050615)
               

               
               1-267, gnl|Mm7|chr5 (116504368-116504640)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr17 (32112612-32112877)
               

               
               1-267, gnl|Hg17|chr12 (117050881-117050615)
               

               
               1-267, gnl|Mm7|chr5 (116504368-116504640)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	1-267, gnl\|bosTau2\|chr17 (32112612-32112877)
	1-267, gnl\|Hg17\|chr12 (117050881-117050615)
	1-267, gnl\|Mm7\|chr5 (116504368-116504640)