Non-Coding RNA Search

rdbla0103_d24.y1

Sequence:


               
               GGAGAAAGTATTTTTAATATTTATAATAGATAAAAAGATTAACAACCAGAAAACAAAGAA
TATTAAGATACAATTCTCACAGGAGGAATGATGAATGTCCAATAAATATGAAAAGCTGTT
TAGCCTGACTCATGATCAGAAAGGAGCAAATTAAAACAATGTGTGCCATTTTGTACCTGT
TGGGGAAAAAAATGAGAAAAAAAAGATAATCAGGTATTGGCATCAGTATAGGAAAATGGA
TACATTTGTATATTCTTAGTGAGAGTATGAGTTGGTATAGCTTTTTCTAGAGGCTGTTTG
GCAATATCTTTTGAAGGGTTAAATGTATAATCCTTTGGTCAAACAAACTGACTTCTTAGT
GCCTGCCCTGGAGATATTCTAATGCACAGAGCTATGTCCAAAGAAATTCATTGTGGAATT
ACTGTGATAGTGAAAAATTGGAAATAACCTAAATAGTTAAATATCCATGGCATATCCATA
TTATGTAATACTGTACAGTGGTTTAAAACATTTTAAGACATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAAGTATTTTTAATATTTATAATAGATAAAAAGATTAACAACCAGAAAACAAAGAA
TATTAAGATACAATTCTCACAGGAGGAATGATGAATGTCCAATAAATATGAAAAGCTGTT
TAGCCTGACTCATGATCAGAAAGGAGCAAATTAAAACAATGTGTGCCATTTTGTACCTGT
TGGGGAAAAAAATGAGAAAAAAAAGATAATCAGGTATTGGCATCAGTATAGGAAAATGGA
TACATTTGTATATTCTTAGTGAGAGTATGAGTTGGTATAGCTTTTTCTAGAGGCTGTTTG
GCAATATCTTTTGAAGGGTTAAATGTATAATCCTTTGGTCAAACAAACTGACTTCTTAGT
GCCTGCCCTGGAGATATTCTAATGCACAGAGCTATGTCCAAAGAAATTCATTGTGGAATT
ACTGTGATAGTGAAAAATTGGAAATAACCTAAATAGTTAAATATCCATGGCATATCCATA
TTATGTAATACTGTACAGTGGTTTAAAACATTTTAAGACATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               204-312, + strand, RNAz p=0.997935

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               204-312, + strand, RNAz p=0.997935

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               16-522, gnl|bosTau2|chr26 (11608811-11608304)
               

               
               16-522, gnl|Hg17|chr10 (101465710-101464821)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-522, gnl|bosTau2|chr26 (11608811-11608304)
               

               
               16-522, gnl|Hg17|chr10 (101465710-101464821)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	16-522, gnl\|bosTau2\|chr26 (11608811-11608304)
	16-522, gnl\|Hg17\|chr10 (101465710-101464821)