Non-Coding RNA Search

rdbla0103_j20.y1

Sequence:


               
               GAAAATGAGACAATGATTCCTGTATTGACATCAAAAAAAGCAAGTGAATTACCAGTCAGT
GAAGTTGCAGGCATTCTCCAAGCTGATCTTCAGAATGGTTTAAACAAATGTGAAGTAAGT
CACAGAAGAGCCTTCCATGGCTGGAATGAGTTTGATATCAGCGAAGATGAGCCATTATGG
AAGAAGTATATTTCTCAGTTTAAAAATCCCCTTATTATGCTGCTTCTGGCCTCTGCAGTC
ATCAGTGTTTTAATGCATCAGTTTGATGATGCTGTCAGTATCACTGTGGCAATACTCATC
GTTGTTACTGTGGCTTTTGTTCAGGAATATCGTTCAGAAAAATCTCTTGAAGAACTAAGT
AAACTTATGCCACCAGAATGCCATTGTGTGCGTGAAGGAAAATTGGAACATACGCTTGCA
CGAGACTTGGTTCCAGGTGATACGGTTTGCCTTTCTGTTGGGGACAGAGTTCCTGCTGAC
TTGCGCTTATTTGAGGCTGTGGACCTTTCCGTTGATGAGTCCAGCTTAACAGGAGAAACA
ACACCGTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGAGATCTTGCCTCA
AGAAGTAACATTGCCTTCATGGGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATGAGACAATGATTCCTGTATTGACATCAAAAAAAGCAAGTGAATTACCAGTCAGT
GAAGTTGCAGGCATTCTCCAAGCTGATCTTCAGAATGGTTTAAACAAATGTGAAGTAAGT
CACAGAAGAGCCTTCCATGGCTGGAATGAGTTTGATATCAGCGAAGATGAGCCATTATGG
AAGAAGTATATTTCTCAGTTTAAAAATCCCCTTATTATGCTGCTTCTGGCCTCTGCAGTC
ATCAGTGTTTTAATGCATCAGTTTGATGATGCTGTCAGTATCACTGTGGCAATACTCATC
GTTGTTACTGTGGCTTTTGTTCAGGAATATCGTTCAGAAAAATCTCTTGAAGAACTAAGT
AAACTTATGCCACCAGAATGCCATTGTGTGCGTGAAGGAAAATTGGAACATACGCTTGCA
CGAGACTTGGTTCCAGGTGATACGGTTTGCCTTTCTGTTGGGGACAGAGTTCCTGCTGAC
TTGCGCTTATTTGAGGCTGTGGACCTTTCCGTTGATGAGTCCAGCTTAACAGGAGAAACA
ACACCGTGTTCTAAGGTGACAGCTCCTCAGCCAGCTGCAACTAATGGAGATCTTGCCTCA
AGAAGTAACATTGCCTTCATGGGAACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12840643|dbj|BAB24903.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12840643|dbj|BAB24903.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-198, + strand, RNAz p=0.63341

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-198, + strand, RNAz p=0.63341

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK074692, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074692, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               82-198, gnl|bosTau2|chr1 (97079606-97079722)
               

               
               82-198, gnl|Hg17|chr3 (132133564-132133680)
               

               
               82-198, gnl|Mm7|chr9 (105185309-105185193)
               


               
               494-627, gnl|bosTau2|chr1 (97110901-97111034)
               

               
               494-627, gnl|canFam2|chr23 (31220431-31220599)
               

               
               494-627, gnl|dasNov1|scaffold_41229 (10993-11155)
               

               
               494-627, gnl|echTel1|scaffold_29450 (984-823)
               

               
               494-627, gnl|fr1|chrUn (260050222-260050055)
               

               
               494-627, gnl|galGal2|chr2 (40798203-40798372)
               

               
               494-627, gnl|hg17|chr3 (132155355-132155524)
               

               
               494-627, gnl|Hg17|chr3 (132155361-132155494)
               

               
               494-627, gnl|loxAfr1|scaffold_11965 (56767-56598)
               

               
               494-627, gnl|mm7|chr9 (105171188-105171023)
               

               
               494-627, gnl|Mm7|chr9 (105171180-105171050)
               

               
               494-627, gnl|monDom2|scaffold_7 (69937901-69937733)
               

               
               494-627, gnl|oryCun1|scaffold_194157 (68256-68088)
               

               
               494-627, gnl|panTro1|chr2 (134202620-134202789)
               

               
               494-627, gnl|rheMac2|chr2 (156739594-156739425)
               

               
               494-627, gnl|rn3|chr8 (110579122-110578954)
               

               
               494-627, gnl|tetNig1|chrUn_random (47037168-47037002)
               

               
               494-627, gnl|xenTro1|scaffold_1296 (165905-165741)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-198, gnl|bosTau2|chr1 (97079606-97079722)
               

               
               82-198, gnl|Hg17|chr3 (132133564-132133680)
               

               
               82-198, gnl|Mm7|chr9 (105185309-105185193)
               


               
               494-627, gnl|bosTau2|chr1 (97110901-97111034)
               

               
               494-627, gnl|canFam2|chr23 (31220431-31220599)
               

               
               494-627, gnl|dasNov1|scaffold_41229 (10993-11155)
               

               
               494-627, gnl|echTel1|scaffold_29450 (984-823)
               

               
               494-627, gnl|fr1|chrUn (260050222-260050055)
               

               
               494-627, gnl|galGal2|chr2 (40798203-40798372)
               

               
               494-627, gnl|hg17|chr3 (132155355-132155524)
               

               
               494-627, gnl|Hg17|chr3 (132155361-132155494)
               

               
               494-627, gnl|loxAfr1|scaffold_11965 (56767-56598)
               

               
               494-627, gnl|mm7|chr9 (105171188-105171023)
               

               
               494-627, gnl|Mm7|chr9 (105171180-105171050)
               

               
               494-627, gnl|monDom2|scaffold_7 (69937901-69937733)
               

               
               494-627, gnl|oryCun1|scaffold_194157 (68256-68088)
               

               
               494-627, gnl|panTro1|chr2 (134202620-134202789)
               

               
               494-627, gnl|rheMac2|chr2 (156739594-156739425)
               

               
               494-627, gnl|rn3|chr8 (110579122-110578954)
               

               
               494-627, gnl|tetNig1|chrUn_random (47037168-47037002)
               

               
               494-627, gnl|xenTro1|scaffold_1296 (165905-165741)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	82-198, gnl\|bosTau2\|chr1 (97079606-97079722)
	82-198, gnl\|Hg17\|chr3 (132133564-132133680)
	82-198, gnl\|Mm7\|chr9 (105185309-105185193)

	494-627, gnl\|bosTau2\|chr1 (97110901-97111034)
	494-627, gnl\|canFam2\|chr23 (31220431-31220599)
	494-627, gnl\|dasNov1\|scaffold_41229 (10993-11155)
	494-627, gnl\|echTel1\|scaffold_29450 (984-823)
	494-627, gnl\|fr1\|chrUn (260050222-260050055)
	494-627, gnl\|galGal2\|chr2 (40798203-40798372)
	494-627, gnl\|hg17\|chr3 (132155355-132155524)
	494-627, gnl\|Hg17\|chr3 (132155361-132155494)
	494-627, gnl\|loxAfr1\|scaffold_11965 (56767-56598)
	494-627, gnl\|mm7\|chr9 (105171188-105171023)
	494-627, gnl\|Mm7\|chr9 (105171180-105171050)
	494-627, gnl\|monDom2\|scaffold_7 (69937901-69937733)
	494-627, gnl\|oryCun1\|scaffold_194157 (68256-68088)
	494-627, gnl\|panTro1\|chr2 (134202620-134202789)
	494-627, gnl\|rheMac2\|chr2 (156739594-156739425)
	494-627, gnl\|rn3\|chr8 (110579122-110578954)
	494-627, gnl\|tetNig1\|chrUn_random (47037168-47037002)
	494-627, gnl\|xenTro1\|scaffold_1296 (165905-165741)