Non-Coding RNA Search

rdbla0104_j22.y1

Sequence:


               
               AAAAATTACCTCAGTGAAGTAATTCTACCAAGTCTTCTCAAACCTTCAGCAGCCTGGTCG
CCTTCGCTAGGTATTTCAGTAAAAATAGAAAACTGGAAATGTCATAAATATGAAGTTATG
ACTTTTCTTAGGCAAGCTTCTATTTCAGTTCAGTAAGAACTGGTTAAGCACATACTGTGT
GCAGGTGTGAACCAGTGCTGTGGCGATCAGAATGTTACGGCATTGTCAGCTCGGGGCACT
ACCATTGCAGATGTCATTGAAGACCTACATCAGGATGTGCTAGAGAGTCTCATCTTGGGG
ACCTATTTTTGCCAAAGATTATCAGAACAAAAAGATAGGTAGAAGAATGGTAATTTTAAC
TAATCAAAGGTTCAGCTTATAGCACTATTAAAGTTTCCATTTGCATTAAAGCCATTGATT
TTGCCCTTTTTGAAGCCTTTCATCACTCAAGTTTTCATCACCGAATCCTTCAAGTCAAAC
GTCAGTTTTGAGTTAGTAGGTTTGCCTAAGCATAAATTAGATCTTTTGCATCATCGAAAT
TTAATACTCAAAACAGTATTTAAATTGTTTAAGCAAATATACATTCTAATAAACAGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATTACCTCAGTGAAGTAATTCTACCAAGTCTTCTCAAACCTTCAGCAGCCTGGTCG
CCTTCGCTAGGTATTTCAGTAAAAATAGAAAACTGGAAATGTCATAAATATGAAGTTATG
ACTTTTCTTAGGCAAGCTTCTATTTCAGTTCAGTAAGAACTGGTTAAGCACATACTGTGT
GCAGGTGTGAACCAGTGCTGTGGCGATCAGAATGTTACGGCATTGTCAGCTCGGGGCACT
ACCATTGCAGATGTCATTGAAGACCTACATCAGGATGTGCTAGAGAGTCTCATCTTGGGG
ACCTATTTTTGCCAAAGATTATCAGAACAAAAAGATAGGTAGAAGAATGGTAATTTTAAC
TAATCAAAGGTTCAGCTTATAGCACTATTAAAGTTTCCATTTGCATTAAAGCCATTGATT
TTGCCCTTTTTGAAGCCTTTCATCACTCAAGTTTTCATCACCGAATCCTTCAAGTCAAAC
GTCAGTTTTGAGTTAGTAGGTTTGCCTAAGCATAAATTAGATCTTTTGCATCATCGAAAT
TTAATACTCAAAACAGTATTTAAATTGTTTAAGCAAATATACATTCTAATAAACAGAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               106-224, + strand, RNAz p=0.991139

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               106-224, + strand, RNAz p=0.991139

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               33-600, gnl|bosTau2|chr23 (9699151-9698587)
               

               
               33-600, gnl|Hg17|chr6 (36594212-36593630)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-600, gnl|bosTau2|chr23 (9699151-9698587)
               

               
               33-600, gnl|Hg17|chr6 (36594212-36593630)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	33-600, gnl\|bosTau2\|chr23 (9699151-9698587)
	33-600, gnl\|Hg17\|chr6 (36594212-36593630)