Non-Coding RNA Search

rdbla0108_m10.y1

Sequence:


               
               CAATGCACAACTGATCTCTCAGTAGATATTCACTTGAGAATAGTGTGGCCTTGATCAGTG
AGAAGGGGAAGGAGAGAAGTGACTTTTCGATTATGTAAAAATGACTCGTTTGCCGAGAGT
CGTTCTGCAGCACTCTTAGTATCTAACGCGTTTGTGGTCGGTCTCCTTGTTGATGGGGGG
AAGTTAATGTTTTTTGACCCCGGGAGTTATGAATTCAATTGAGTTGTCTTCTATTTTTAG
GAAGTATCAGAATTGCTCTGATAAGTAACAAAGTTTGACTGCTTTGATGTCCAATCTCAG
GTTTTAGAATATATATAGTGGCGTAAAATTCCACTGTTAACTCTTAAACAATTTTAATCT
AGTACGTTCCCTAAAAGTCACACGCAGGAGGCCTGTTCAGAGAGCAGAGCCTCCCACCTT
TTTGCCCCTTTTCCACTTTGTACTTCACTTGAGAAAGTGTCAAGTGATTTTCCATTGAAT
GTTTCCATTTTAACCCTGACGTATTTCTCAAAGATAAAGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGCACAACTGATCTCTCAGTAGATATTCACTTGAGAATAGTGTGGCCTTGATCAGTG
AGAAGGGGAAGGAGAGAAGTGACTTTTCGATTATGTAAAAATGACTCGTTTGCCGAGAGT
CGTTCTGCAGCACTCTTAGTATCTAACGCGTTTGTGGTCGGTCTCCTTGTTGATGGGGGG
AAGTTAATGTTTTTTGACCCCGGGAGTTATGAATTCAATTGAGTTGTCTTCTATTTTTAG
GAAGTATCAGAATTGCTCTGATAAGTAACAAAGTTTGACTGCTTTGATGTCCAATCTCAG
GTTTTAGAATATATATAGTGGCGTAAAATTCCACTGTTAACTCTTAAACAATTTTAATCT
AGTACGTTCCCTAAAAGTCACACGCAGGAGGCCTGTTCAGAGAGCAGAGCCTCCCACCTT
TTTGCCCCTTTTCCACTTTGTACTTCACTTGAGAAAGTGTCAAGTGATTTTCCATTGAAT
GTTTCCATTTTAACCCTGACGTATTTCTCAAAGATAAAGCACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               236-523, - strand, RNAz p=0.971286
               

               
               243-335, + strand, RNAz p=0.69321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-523, - strand, RNAz p=0.971286
               

               
               243-335, + strand, RNAz p=0.69321

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               436-524, - strand, RNAmicro p=0.998402

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               436-524, - strand, RNAmicro p=0.998402

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-523, gnl|bosTau2|chr4 (43132039-43131528)
               

               
               1-523, gnl|canFam2|chrUn (25988630-25986682)
               

               
               1-523, gnl|dasNov1|scaffold_33513 (4999-3028)
               

               
               1-523, gnl|echTel1|scaffold_190747 (3614-5572)
               

               
               1-523, gnl|hg17|chr7 (44692167-44694117)
               

               
               1-523, gnl|Hg17|chr7 (44693199-44692691)
               

               
               1-523, gnl|loxAfr1|scaffold_9824 (38303-40263)
               

               
               1-523, gnl|mm7|chr11 (6421876-6423759)
               

               
               1-523, gnl|Mm7|chr11 (6422855-6422373)
               

               
               1-523, gnl|monDom2|scaffold_1 (154843824-154841876)
               

               
               1-523, gnl|oryCun1|scaffold_208397 (49274-51226)
               

               
               1-523, gnl|panTro1|chr6 (46211302-46213257)
               

               
               1-523, gnl|rheMac2|chr3 (81463873-81461935)
               

               
               1-523, gnl|rn3|chr14 (87245954-87247832)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr4 (43132039-43131528)
               

               
               1-523, gnl|canFam2|chrUn (25988630-25986682)
               

               
               1-523, gnl|dasNov1|scaffold_33513 (4999-3028)
               

               
               1-523, gnl|echTel1|scaffold_190747 (3614-5572)
               

               
               1-523, gnl|hg17|chr7 (44692167-44694117)
               

               
               1-523, gnl|Hg17|chr7 (44693199-44692691)
               

               
               1-523, gnl|loxAfr1|scaffold_9824 (38303-40263)
               

               
               1-523, gnl|mm7|chr11 (6421876-6423759)
               

               
               1-523, gnl|Mm7|chr11 (6422855-6422373)
               

               
               1-523, gnl|monDom2|scaffold_1 (154843824-154841876)
               

               
               1-523, gnl|oryCun1|scaffold_208397 (49274-51226)
               

               
               1-523, gnl|panTro1|chr6 (46211302-46213257)
               

               
               1-523, gnl|rheMac2|chr3 (81463873-81461935)
               

               
               1-523, gnl|rn3|chr14 (87245954-87247832)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	236-523, - strand, RNAz p=0.971286
	243-335, + strand, RNAz p=0.69321

	1-523, gnl\|bosTau2\|chr4 (43132039-43131528)
	1-523, gnl\|canFam2\|chrUn (25988630-25986682)
	1-523, gnl\|dasNov1\|scaffold_33513 (4999-3028)
	1-523, gnl\|echTel1\|scaffold_190747 (3614-5572)
	1-523, gnl\|hg17\|chr7 (44692167-44694117)
	1-523, gnl\|Hg17\|chr7 (44693199-44692691)
	1-523, gnl\|loxAfr1\|scaffold_9824 (38303-40263)
	1-523, gnl\|mm7\|chr11 (6421876-6423759)
	1-523, gnl\|Mm7\|chr11 (6422855-6422373)
	1-523, gnl\|monDom2\|scaffold_1 (154843824-154841876)
	1-523, gnl\|oryCun1\|scaffold_208397 (49274-51226)
	1-523, gnl\|panTro1\|chr6 (46211302-46213257)
	1-523, gnl\|rheMac2\|chr3 (81463873-81461935)
	1-523, gnl\|rn3\|chr14 (87245954-87247832)