Non-Coding RNA Search

rdbla0110_e9.y1

Sequence:


               
               TTTacagctgtggcaaacaccggatgctttagcctgctgcgccaggccagggatcaaacc
cacacctctgcagcaacccaagccactgcagtcgaattcttaacccactgcACCGTGGCA
CAAACTCCTGGGTAGTGTCAGTTTTGAAAGGTTTTTTTTTCCCCCGTTGCATTTAAAGCT
TTTATTTAAATGTTCACGACTTAGTGTTGTAGGTGCCAAACCAGTTTTTACTTCTATTAT
GAGAACTACCAAGCGTGACTTAATCAGGCATAAGAAACAGGAATGTGAAATTTGGATAAT
GTTCTACTTGCATGACTATGAAATAATGCTGCTTATAAAGTTTAAGTGCTTTTATGTTCT
GTGCTCTGTACATCATTTTTTTTCCTTTCTATTTTTCACTCCTGGCTGATATGCTAATGC
AATATCTTATCTTTGGTCTTAAGCTGTCACATTAGGTATAGTTAAATTAAGTTAGAACTA
TTTGGCAGAAAGAAAGATAAAACCTTTCTGCCTGTTTTATCATAAAACTGCATTTTTACG
GTTGCTTGGCATGAGAACTATTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTacagctgtggcaaacaccggatgctttagcctgctgcgccaggccagggatcaaacc
cacacctctgcagcaacccaagccactgcagtcgaattcttaacccactgcACCGTGGCA
CAAACTCCTGGGTAGTGTCAGTTTTGAAAGGTTTTTTTTTCCCCCGTTGCATTTAAAGCT
TTTATTTAAATGTTCACGACTTAGTGTTGTAGGTGCCAAACCAGTTTTTACTTCTATTAT
GAGAACTACCAAGCGTGACTTAATCAGGCATAAGAAACAGGAATGTGAAATTTGGATAAT
GTTCTACTTGCATGACTATGAAATAATGCTGCTTATAAAGTTTAAGTGCTTTTATGTTCT
GTGCTCTGTACATCATTTTTTTTCCTTTCTATTTTTCACTCCTGGCTGATATGCTAATGC
AATATCTTATCTTTGGTCTTAAGCTGTCACATTAGGTATAGTTAAATTAAGTTAGAACTA
TTTGGCAGAAAGAAAGATAAAACCTTTCTGCCTGTTTTATCATAAAACTGCATTTTTACG
GTTGCTTGGCATGAGAACTATTTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               378-530, + strand, RNAz p=0.535251
               

               
               410-563, - strand, RNAz p=0.996827

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-530, + strand, RNAz p=0.535251
               

               
               410-563, - strand, RNAz p=0.996827

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               144-563, gnl|bosTau2|chr2 (69059443-69059868)
               

               
               144-563, gnl|canFam2|chr25 (43133438-43133726)
               

               
               144-563, gnl|dasNov1|scaffold_51226 (130-412)
               

               
               144-563, gnl|echTel1|scaffold_302794 (37839-38152)
               

               
               144-563, gnl|galGal2|chr9 (4212970-4212691)
               

               
               144-563, gnl|hg17|chr2 (228039814-228040099)
               

               
               144-563, gnl|Hg17|chr2 (228039824-228040246)
               

               
               144-563, gnl|loxAfr1|scaffold_13566 (15680-15956)
               

               
               144-563, gnl|mm7|chr1 (82952922-82953182)
               

               
               144-563, gnl|Mm7|chr1 (82952933-82953321)
               

               
               144-563, gnl|monDom2|scaffold_28 (8845145-8845407)
               

               
               144-563, gnl|panTro1|chr13 (118639390-118639675)
               

               
               144-563, gnl|rheMac2|chr12 (91240228-91240513)
               

               
               144-563, gnl|rn3|chr9 (82246274-82246539)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-563, gnl|bosTau2|chr2 (69059443-69059868)
               

               
               144-563, gnl|canFam2|chr25 (43133438-43133726)
               

               
               144-563, gnl|dasNov1|scaffold_51226 (130-412)
               

               
               144-563, gnl|echTel1|scaffold_302794 (37839-38152)
               

               
               144-563, gnl|galGal2|chr9 (4212970-4212691)
               

               
               144-563, gnl|hg17|chr2 (228039814-228040099)
               

               
               144-563, gnl|Hg17|chr2 (228039824-228040246)
               

               
               144-563, gnl|loxAfr1|scaffold_13566 (15680-15956)
               

               
               144-563, gnl|mm7|chr1 (82952922-82953182)
               

               
               144-563, gnl|Mm7|chr1 (82952933-82953321)
               

               
               144-563, gnl|monDom2|scaffold_28 (8845145-8845407)
               

               
               144-563, gnl|panTro1|chr13 (118639390-118639675)
               

               
               144-563, gnl|rheMac2|chr12 (91240228-91240513)
               

               
               144-563, gnl|rn3|chr9 (82246274-82246539)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	378-530, + strand, RNAz p=0.535251
	410-563, - strand, RNAz p=0.996827

	144-563, gnl\|bosTau2\|chr2 (69059443-69059868)
	144-563, gnl\|canFam2\|chr25 (43133438-43133726)
	144-563, gnl\|dasNov1\|scaffold_51226 (130-412)
	144-563, gnl\|echTel1\|scaffold_302794 (37839-38152)
	144-563, gnl\|galGal2\|chr9 (4212970-4212691)
	144-563, gnl\|hg17\|chr2 (228039814-228040099)
	144-563, gnl\|Hg17\|chr2 (228039824-228040246)
	144-563, gnl\|loxAfr1\|scaffold_13566 (15680-15956)
	144-563, gnl\|mm7\|chr1 (82952922-82953182)
	144-563, gnl\|Mm7\|chr1 (82952933-82953321)
	144-563, gnl\|monDom2\|scaffold_28 (8845145-8845407)
	144-563, gnl\|panTro1\|chr13 (118639390-118639675)
	144-563, gnl\|rheMac2\|chr12 (91240228-91240513)
	144-563, gnl\|rn3\|chr9 (82246274-82246539)