rdbla0120_d21.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTAGCCAAGGTGGAGGATGGGAAAAGAATGGAGCTGTCCCAGCTACTCAATGAGATCAG GGGCAAACTATGAAAAGCTCCTCACCAGAAATCAGATAGAGACCGTGCTTTCAACAAGGA TCCAGGTAATGATTTCATACAGACAGGCATCTTCCAGGATAAGGAGACAATCCATGTCTA TCCAATTCCTGTCCCGGCCTCTCTGAGCTAGAAGAAGATCTAAGCAAAAAAATGGACAAA GATGAAGAGGCTTTAAAGGCGGCTCAGGCAGAGCTCAAGGAAGCCCGGCGCCAGTGGCAC CACCTGCAAGTGGAAATTGAATCTCTCCATGCTGTGGAAAGGGGCCTTGAAAACTCCCTC CATGCCAGCGAACAACATTACCAGATGCAGCTTCAAGACCTAGAGGCAGTGATTGAAGGA CTAGAAAAAGAGCTACAGGAAGTAAGGCGTGGCATCGAAAAGCAGCTTCAAGAGCATGAG ATGCTTCTCAACACGAAGATGCGGCTAGAACAAGAAATCGCAACTTATCGCCGCCTCTTA GAAAAGGAAGAAATCAGATATTATGGTTGTATCCAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTAGCCAAGGTGGAGGATGGGAAAAGAATGGAGCTGTCCCAGCTACTCAATGAGATCAG GGGCAAACTATGAAAAGCTCCTCACCAGAAATCAGATAGAGACCGTGCTTTCAACAAGGA TCCAGGTAATGATTTCATACAGACAGGCATCTTCCAGGATAAGGAGACAATCCATGTCTA TCCAATTCCTGTCCCGGCCTCTCTGAGCTAGAAGAAGATCTAAGCAAAAAAATGGACAAA GATGAAGAGGCTTTAAAGGCGGCTCAGGCAGAGCTCAAGGAAGCCCGGCGCCAGTGGCAC CACCTGCAAGTGGAAATTGAATCTCTCCATGCTGTGGAAAGGGGCCTTGAAAACTCCCTC CATGCCAGCGAACAACATTACCAGATGCAGCTTCAAGACCTAGAGGCAGTGATTGAAGGA CTAGAAAAAGAGCTACAGGAAGTAAGGCGTGGCATCGAAAAGCAGCTTCAAGAGCATGAG ATGCTTCTCAACACGAAGATGCGGCTAGAACAAGAAATCGCAACTTATCGCCGCCTCTTA GAAAAGGAAGAAATCAGATATTATGGTTGTATCCAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 336-560, - strand, RNAz p=0.958964 | |
| 415-560, - strand, RNAz p=0.984972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 336-560, - strand, RNAz p=0.958964 | |
| 415-560, - strand, RNAz p=0.984972 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-210, gnl|bosTau2|chr19 (34010879-34011087) | |
| 1-210, gnl|canFam2|chr9 (25329649-25329424) | |
| 1-210, gnl|echTel1|scaffold_319302 (117824-117609) | |
| 1-210, gnl|galGal2|chr27_random (636701-636472) | |
| 1-210, gnl|hg17|chr17 (36074603-36074827) | |
| 1-210, gnl|Hg17|chr17 (36074905-36074697) | |
| 1-210, gnl|mm7|chr11 (99352799-99353027) | |
| 1-210, gnl|Mm7|chr11 (99353105-99352898) | |
| 1-210, gnl|monDom2|scaffold_18 (50042642-50042869) | |
| 1-210, gnl|oryCun1|scaffold_203191 (94299-94075) | |
| 1-210, gnl|panTro1|chr19 (39321391-39321615) | |
| 1-210, gnl|rheMac2|chr16 (50779987-50780211) | |
| 1-210, gnl|rn3|chr10 (88157716-88157945) | |
| 1-210, gnl|xenTro1|scaffold_574 (438153-437933) | |
| 336-560, gnl|bosTau2|chr19 (34014903-34015127) | |
| 336-560, gnl|canFam2|chr9 (25333894-25333755) | |
| 336-560, gnl|danRer3|chr22 (10339819-10339955) | |
| 336-560, gnl|dasNov1|scaffold_2116 (92566-92705) | |
| 336-560, gnl|echTel1|scaffold_319302 (121893-121754) | |
| 336-560, gnl|fr1|chrUn (127658955-127659090) | |
| 336-560, gnl|galGal2|chr27_random (638683-638544) | |
| 336-560, gnl|hg17|chr17 (36069760-36069899) | |
| 336-560, gnl|Hg17|chr17 (36069986-36069762) | |
| 336-560, gnl|loxAfr1|scaffold_23093 (24936-24809) | |
| 336-560, gnl|mm7|chr11 (99347568-99347707) | |
| 336-560, gnl|Mm7|chr11 (99347794-99347570) | |
| 336-560, gnl|monDom2|scaffold_18 (50028273-50028412) | |
| 336-560, gnl|oryCun1|scaffold_203191 (99413-99274) | |
| 336-560, gnl|panTro1|chr19 (39316541-39316680) | |
| 336-560, gnl|rheMac2|chr16 (50775108-50775247) | |
| 336-560, gnl|rn3|chr10 (88151763-88151902) | |
| 336-560, gnl|tetNig1|chr18 (951672-951537) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-210, gnl|bosTau2|chr19 (34010879-34011087) | |
| 1-210, gnl|canFam2|chr9 (25329649-25329424) | |
| 1-210, gnl|echTel1|scaffold_319302 (117824-117609) | |
| 1-210, gnl|galGal2|chr27_random (636701-636472) | |
| 1-210, gnl|hg17|chr17 (36074603-36074827) | |
| 1-210, gnl|Hg17|chr17 (36074905-36074697) | |
| 1-210, gnl|mm7|chr11 (99352799-99353027) | |
| 1-210, gnl|Mm7|chr11 (99353105-99352898) | |
| 1-210, gnl|monDom2|scaffold_18 (50042642-50042869) | |
| 1-210, gnl|oryCun1|scaffold_203191 (94299-94075) | |
| 1-210, gnl|panTro1|chr19 (39321391-39321615) | |
| 1-210, gnl|rheMac2|chr16 (50779987-50780211) | |
| 1-210, gnl|rn3|chr10 (88157716-88157945) | |
| 1-210, gnl|xenTro1|scaffold_574 (438153-437933) | |
| 336-560, gnl|bosTau2|chr19 (34014903-34015127) | |
| 336-560, gnl|canFam2|chr9 (25333894-25333755) | |
| 336-560, gnl|danRer3|chr22 (10339819-10339955) | |
| 336-560, gnl|dasNov1|scaffold_2116 (92566-92705) | |
| 336-560, gnl|echTel1|scaffold_319302 (121893-121754) | |
| 336-560, gnl|fr1|chrUn (127658955-127659090) | |
| 336-560, gnl|galGal2|chr27_random (638683-638544) | |
| 336-560, gnl|hg17|chr17 (36069760-36069899) | |
| 336-560, gnl|Hg17|chr17 (36069986-36069762) | |
| 336-560, gnl|loxAfr1|scaffold_23093 (24936-24809) | |
| 336-560, gnl|mm7|chr11 (99347568-99347707) | |
| 336-560, gnl|Mm7|chr11 (99347794-99347570) | |
| 336-560, gnl|monDom2|scaffold_18 (50028273-50028412) | |
| 336-560, gnl|oryCun1|scaffold_203191 (99413-99274) | |
| 336-560, gnl|panTro1|chr19 (39316541-39316680) | |
| 336-560, gnl|rheMac2|chr16 (50775108-50775247) | |
| 336-560, gnl|rn3|chr10 (88151763-88151902) | |
| 336-560, gnl|tetNig1|chr18 (951672-951537) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.124347) |