Non-Coding RNA Search

rdbla0121_d22.y1

Sequence:


               
               CAAAGGATGACTGGAAAGAAAGAAGAAGGGAGGAAAGAAACAGGAAGGAAAGAAGGGAAG
AAAGGAAGGAAGAAGAGCACATCAGCACCTACCTGGGAACCAAATTAGAACTTGAACCCC
ATGGCGATGGTACCCAGTCCACACAGATATTTGAGAGTGATAAGTGATTGATGCAGCATC
TGGACCTGACATCTGTGGGGAAACAGAGCTCTGTACACAGAAAAATGTTCCGTTATTTGC
AGTTTCTTATTCCTCCGACTCTCGATAATTAAAGACTTATACATCCGTCTGCAAAGACAG
ACACCAGATTCACTGCTGCAGGATGTTGCATTTGATGGCGGCGTGTTTATGGAACATCAA
AAGCCTGTTTCTGACGTGTGCTGCAGACTAGATGGACCTTGTGGTCAGACAAAGCTGCTC
CCAGCTCCTCAGAAGGGTGCAGAGCTCAGAAAATCACCAGATTTGGAGACTCCTCAAATT
AAAGTAATAAGCATGTTGGGGATTCAAGTTTAAACTGAGGAGAGAGATTTATCTGAGAAC
ATTTAACACCCTATGATACCGGTAATCCTGTCATTTGGTACCATTTCATTTTTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGGATGACTGGAAAGAAAGAAGAAGGGAGGAAAGAAACAGGAAGGAAAGAAGGGAAG
AAAGGAAGGAAGAAGAGCACATCAGCACCTACCTGGGAACCAAATTAGAACTTGAACCCC
ATGGCGATGGTACCCAGTCCACACAGATATTTGAGAGTGATAAGTGATTGATGCAGCATC
TGGACCTGACATCTGTGGGGAAACAGAGCTCTGTACACAGAAAAATGTTCCGTTATTTGC
AGTTTCTTATTCCTCCGACTCTCGATAATTAAAGACTTATACATCCGTCTGCAAAGACAG
ACACCAGATTCACTGCTGCAGGATGTTGCATTTGATGGCGGCGTGTTTATGGAACATCAA
AAGCCTGTTTCTGACGTGTGCTGCAGACTAGATGGACCTTGTGGTCAGACAAAGCTGCTC
CCAGCTCCTCAGAAGGGTGCAGAGCTCAGAAAATCACCAGATTTGGAGACTCCTCAAATT
AAAGTAATAAGCATGTTGGGGATTCAAGTTTAAACTGAGGAGAGAGATTTATCTGAGAAC
ATTTAACACCCTATGATACCGGTAATCCTGTCATTTGGTACCATTTCATTTTTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-546, + strand, RNAz p=0.785781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-546, + strand, RNAz p=0.785781

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               208-595, gnl|bosTau2|chr11 (31373357-31373757)
               

               
               208-595, gnl|Hg17|chr18 (6616884-6616484)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-595, gnl|bosTau2|chr11 (31373357-31373757)
               

               
               208-595, gnl|Hg17|chr18 (6616884-6616484)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	208-595, gnl\|bosTau2\|chr11 (31373357-31373757)
	208-595, gnl\|Hg17\|chr18 (6616884-6616484)