Non-Coding RNA Search

rdbla0122_e21.y1

Sequence:


               
               CCAAATTCAAATTTTCAAAGTGGATACCAAGAGGTTCTCATTTTTGTTTGTTTTACAAAA
CCTTATTGAATGGCCTATTGAAATAGTAACTTTTGTAATTCATTAAATATTATTTATAGA
ACATTAGTTGCTTAACTGCAGAGCTAGAGGGCAGATAAACTGAAATTGAGTTGAGTCACT
GCCAAATTAAGATCAGAAATTAAGATAAAGAATCTCTTACACTTAAAAATGATATTTATT
GGCAACTTCTTATGAATATGTCTGTAGTGCAAAAGATGTCTATTTATAATGCATTCTTGT
TGTGAATTTAATGACCATATGTTTTAATTAATTTGAAAACTGTTGCTGGCAGTTGGTCAG
AATAGGAACTGGCAAACCTATTCTCCAGGTAGTATCTAGGGGCTGTTTGACAGCTTCCTT
TCCTTATTGTGAAAGCCTTGATCTGATTACATAATATGTGTGTGTGCACGTGCGTGTGCT
TGCGCACACACATTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAATTCAAATTTTCAAAGTGGATACCAAGAGGTTCTCATTTTTGTTTGTTTTACAAAA
CCTTATTGAATGGCCTATTGAAATAGTAACTTTTGTAATTCATTAAATATTATTTATAGA
ACATTAGTTGCTTAACTGCAGAGCTAGAGGGCAGATAAACTGAAATTGAGTTGAGTCACT
GCCAAATTAAGATCAGAAATTAAGATAAAGAATCTCTTACACTTAAAAATGATATTTATT
GGCAACTTCTTATGAATATGTCTGTAGTGCAAAAGATGTCTATTTATAATGCATTCTTGT
TGTGAATTTAATGACCATATGTTTTAATTAATTTGAAAACTGTTGCTGGCAGTTGGTCAG
AATAGGAACTGGCAAACCTATTCTCCAGGTAGTATCTAGGGGCTGTTTGACAGCTTCCTT
TCCTTATTGTGAAAGCCTTGATCTGATTACATAATATGTGTGTGTGCACGTGCGTGTGCT
TGCGCACACACATTCCA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               6-473, gnl|bosTau2|chr27 (13866502-13866964)
               

               
               6-473, gnl|canFam2|chr3 (28631248-28630973)
               

               
               6-473, gnl|hg17|chr5 (80911246-80911564)
               

               
               6-473, gnl|Hg17|chr5 (80911688-80911272)
               

               
               6-473, gnl|loxAfr1|scaffold_69384 (1370-1724)
               

               
               6-473, gnl|mm7|chr13 (88665351-88665653)
               

               
               6-473, gnl|Mm7|chr13 (88666449-88665384)
               

               
               6-473, gnl|panTro1|chr4 (34267196-34266878)
               

               
               6-473, gnl|rheMac2|chr6 (77767186-77767504)
               

               
               6-473, gnl|rn3|chr2 (21709184-21709487)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-473, gnl|bosTau2|chr27 (13866502-13866964)
               

               
               6-473, gnl|canFam2|chr3 (28631248-28630973)
               

               
               6-473, gnl|hg17|chr5 (80911246-80911564)
               

               
               6-473, gnl|Hg17|chr5 (80911688-80911272)
               

               
               6-473, gnl|loxAfr1|scaffold_69384 (1370-1724)
               

               
               6-473, gnl|mm7|chr13 (88665351-88665653)
               

               
               6-473, gnl|Mm7|chr13 (88666449-88665384)
               

               
               6-473, gnl|panTro1|chr4 (34267196-34266878)
               

               
               6-473, gnl|rheMac2|chr6 (77767186-77767504)
               

               
               6-473, gnl|rn3|chr2 (21709184-21709487)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	6-473, gnl\|bosTau2\|chr27 (13866502-13866964)
	6-473, gnl\|canFam2\|chr3 (28631248-28630973)
	6-473, gnl\|hg17\|chr5 (80911246-80911564)
	6-473, gnl\|Hg17\|chr5 (80911688-80911272)
	6-473, gnl\|loxAfr1\|scaffold_69384 (1370-1724)
	6-473, gnl\|mm7\|chr13 (88665351-88665653)
	6-473, gnl\|Mm7\|chr13 (88666449-88665384)
	6-473, gnl\|panTro1\|chr4 (34267196-34266878)
	6-473, gnl\|rheMac2\|chr6 (77767186-77767504)
	6-473, gnl\|rn3\|chr2 (21709184-21709487)